Basic Information
Locus ID:
nbisL1-mrna-9184
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 52934 | 54032 | - | nbisL1-mrna-9184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 35,540.38 Da | 33.49 | 74.82 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 27 | 323 | 1.78138E-148 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 33 | 317 | 1.2E-68 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 34 | 320 | 1.17E-63 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 43 | 253 | 7.5E-74 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 289 | 319 | 9.6E-19 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 254 | 288 | 9.6E-19 | IPR029070 |
| SMART | SM00636 | 2g34 | 29 | 317 | 1.5E-85 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 29 | 326 | 65.25148 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002309324.1 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | B9HAQ4 | GH18 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G188300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology