Basic Information
Locus ID:
nbisL1-mrna-9181
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000193F_pilon | 2552 | 3657 | - | nbisL1-mrna-9181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 38,888.07 Da | 39.00 | 73.28 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 27 | 354 | 1.65349E-135 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 33 | 348 | 7.1E-77 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 34 | 350 | 2.81E-63 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 254 | 319 | 1.06E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 43 | 350 | 1.5E-102 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 253 | 319 | 1.5E-102 | IPR029070 |
| SMART | SM00636 | 2g34 | 29 | 348 | 6.3E-95 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 29 | 357 | 65.153152 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002309324.1 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YIX8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology