Basic Information
Locus ID:
nbisL1-mrna-9171
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002106F_pilon | 4894205 | 4916469 | + | nbisL1-mrna-9171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 194,219.53 Da | 42.15 | 99.51 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1149 | 1369 | 6.63116E-114 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 215 | 500 | 1.30667E-103 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 525 | 726 | 7.64061E-77 | - |
| Pfam | PF00005 | ABC transporter | 1168 | 1316 | 2.6E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 543 | 678 | 2.8E-14 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 830 | 1078 | 6.9E-31 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 214 | 481 | 4.2E-35 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1141 | 1384 | 1.74E-71 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 522 | 748 | 8.58E-44 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 197 | 505 | 2.09E-41 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 814 | 1131 | 9.81E-48 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 185 | 510 | 3.1E-62 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1134 | 1387 | 1.7E-86 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 794 | 1132 | 2.7E-55 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 519 | 775 | 9.0E-58 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1496 | 1599 | 7.0E-6 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1177 | 1370 | 8.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 552 | 726 | 1.8E-6 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 525 | 749 | 19.041075 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 214 | 493 | 38.39307 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1151 | 1385 | 18.374146 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 832 | 1114 | 32.333305 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 1288 | 1302 | - | IPR017871 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 651 | 665 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 793 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34660.1 | multidrug resistance-associated protein 2. encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021643983.1 | ABC transporter C family member 12-like [Hevea brasiliensis] | 0 |
| Q42093 | ABC transporter C family member 2 OS=Arabidopsis thaliana OX=3702 GN=ABCC2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9VNA5 | ABC-type xenobiotic transporter OS=Manihot esculenta OX=3983 GN=MANES_06G060800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20807, jg20810, jg22314, jg25043 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22572, gene_22584 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016406 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g153720, BVRB_8g187450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg36010, Sbi_jg555 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4098 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028238 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22438, Sgl27574 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009287, gene:ENSEOMG00000011228 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0013280, CQ.Regalona.r1.8BG0012520 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30073940, pistato.v30076000, pistato.v30076020 ... |
| Apiaceae | Apium graveolens | 5 | Ag11G04943, Ag11G04944, Ag11G04945, Ag11G05079, Ag6G01147 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G008000 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103695628, gene-LOC103723484, gene-LOC120108582 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.10.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri15G20156, Ftri16G15844, Ftri16G18074, Ftri18G30723 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G30400.1, AT1G30410.1, AT1G30420.1, AT2G34660.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10006546m.g.v1.0, Thhalv10006558m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g26230.v2.2, Sp1g26240.v2.2, Sp4g16940.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB03g016090.2N, BniB03g034370.2N, BniB03g034390.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq04G0526, Ceq04G0529, Ceq04G0531, Ceq04G0535, Ceq04G0536 |
| Casuarinaceae | Casuarina glauca | 5 | Cgl04G0626, Cgl04G0627, Cgl04G0628, Cgl04G0629, Cgl04G0631 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g02980, gene.Cymno09g03070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2478s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate05g03550, gene.Thate05g03560, gene.Thate05g03570 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG12.168, evm.TU.LG12.169, evm.TU.LG12.175 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00013067, Pov_00013071, Pov_00013074 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G14426, Lb2G14428, Lb2G14429 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2326, BH09.2523, CH09.2760 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0303600, gene-QOZ80_4BG0334490 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195130.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_046338, gene-QYE76_047328 |
| Poaceae | Oryza coarctata | 2 | Oco07G016200, Oco08G015700 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g52900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G232300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301130, Pt_Chr0307470 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G004610, Chr24G007140, Chr25G002910, Chr30G002860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G784600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG059570, gene_TRIDC1BG068180 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G404300.1, TraesCS1B02G433800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb070400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22897, nbis-gene-5877 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20470, Zma_g21983 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1143, evm.TU.LG05.1684 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc08g07310, gene.Posoc08g07320, gene.Posoc08g07330 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.950 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-16723, nbisL1-mrna-16726, nbisL1-mrna-16728 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19450, nbisL1-mrna-19451, nbisL1-mrna-7599 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-17254, nbisL1-mrna-17256, nbisL1-mrna-17257 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000025l.119, evm.TU.utg000025l.121 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012189, Maker00012267 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-8645, nbisL1-mrna-8646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-9170, nbisL1-mrna-9171 |
| Salicaceae | Populus euphratica | 5 | populus_peu10152, populus_peu17830, populus_peu17836 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609402, gene-LOC132627114 |
| Solanaceae | Solanum chilense | 5 | SOLCI001326800, SOLCI001326900, SOLCI001327100 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007056, gene-LOC107028302 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9699 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1122, TC06G1128 |
| Zosteraceae | Zostera marina | 3 | Zosma03g34800.v3.1, Zosma256g00010.v3.1, Zosma837g00010.v3.1 |