halophFGD

Basic Information

Locus ID: nbisL1-mrna-9166

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
002106F_pilon	4821646	4825697	+	nbisL1-mrna-9166

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.52	37,627.70 Da	64.08	79.88	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13516	Leucine Rich repeat	134	156	0.22	IPR001611
Pfam	PF12937	F-box-like	39	84	3.7E-6	IPR001810
Pfam	PF13516	Leucine Rich repeat	218	236	0.073	IPR001611
SUPERFAMILY	SSF101447	Formin homology 2 domain (FH2 domain)	8	58	4.18E-7	-
SUPERFAMILY	SSF52047	RNI-like	63	255	1.16E-20	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	76	273	1.9E-26	IPR032675
Gene3D	G3DSA:1.20.1280.50	-	38	75	4.2E-8	-
SMART	SM00367	LRR_CC_2	159	183	130.0	IPR006553
SMART	SM00367	LRR_CC_2	240	263	73.0	IPR006553
SMART	SM00367	LRR_CC_2	133	158	0.31	IPR006553
SMART	SM00367	LRR_CC_2	215	239	240.0	IPR006553
ProSiteProfiles	PS50181	F-box domain profile.	35	82	9.974368	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	1	30	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	21	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10268 (F-box and leucine-rich repeat protein 2/20)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G05460.1	RNI-like superfamily protein.
RefSeq	XP_021661102.1	F-box protein SKIP19-like [Hevea brasiliensis]
Swiss-Prot	Q9M0U9	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1
TrEMBL	A0A2P2JMC0	Uncharacterized protein MANES_14G135100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg20796, jg20799, jg20800, jg20801, jg25023, jg25038 ... jg38768
Aizoaceae	Mesembryanthemum crystallinum	2	gene_22563, gene_23874
Amaranthaceae	Atriplex hortensis	5	Ah008894, Ah016403, Ah035513, Ah035515, Ah035516
Amaranthaceae	Beta vulgaris	3	BVRB_2g027120, BVRB_2g027130, BVRB_8g187380
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg21812, Sbi_jg21814, Sbi_jg22000, Sbi_jg22002 ... Sbi_jg40558
Amaranthaceae	Salicornia europaea	3	Seu_jg15933, Seu_jg15935, Seu_jg2147
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00018102, GOSA_00018103
Amaranthaceae	Suaeda glauca	16	Sgl13279, Sgl27040, Sgl45215, Sgl45233, Sgl45234, Sgl45243 ... Sgl50011, Sgl50014, Sgl50025, Sgl63229, Sgl63230, Sgl63364, Sgl63365, Sgl63366, Sgl67841, Sgl67842
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000009447, gene:ENSEOMG00000016860 ... gene:ENSEOMG00000017895, gene:ENSEOMG00000018061, gene:ENSEOMG00000020735, gene:ENSEOMG00000020846, gene:ENSEOMG00000031883, gene:ENSEOMG00000047802, gene:ENSEOMG00000051823
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0019000, CQ.Regalona.r1.2AG0019010 ... CQ.Regalona.r1.2AG0019030, CQ.Regalona.r1.2BG0020650, CQ.Regalona.r1.2BG0020660, CQ.Regalona.r1.4AG0023420, CQ.Regalona.r1.8AG0010130
Apiaceae	Apium graveolens	7	Ag11G04938, Ag6G01145, Ag6G01149, Ag6G01151, Ag6G01220 ... Ag8G00323, AgUnG00234
Arecaceae	Phoenix dactylifera	1	gene-LOC103705624
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.3.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G01611, Ftri14G18342, Ftri14G20505, Ftri15G03599
Brassicaceae	Arabidopsis thaliana	8	AT4G03630.1, AT4G03635.1, AT4G05460.1, AT4G05470.1 ... AT4G05475.1, AT4G05490.1, AT4G05497.1, AT5G52480.1
Brassicaceae	Eutrema salsugineum	9	Thhalv10009631m.g.v1.0, Thhalv10010638m.g.v1.0 ... Thhalv10023830m.g.v1.0, Thhalv10027905m.g.v1.0, Thhalv10028845m.g.v1.0, Thhalv10028911m.g.v1.0, Thhalv10029272m.g.v1.0, Thhalv10029275m.g.v1.0, Thhalv10029411m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g06280.v2.2, Sp6g03620.v2.2, SpUn0416_0010.v2.2 ... SpUn0416_0020.v2.2
Brassicaceae	Brassica nigra	23	BniB01g023450.2N, BniB02g003630.2N, BniB03g002270.2N ... BniB03g002280.2N, BniB05g041720.2N, BniB05g041730.2N, BniB05g068440.2N, BniB05g068490.2N, BniB08g036100.2N, BniB08g038580.2N, BniB08g038590.2N, BniB08g038670.2N, BniB08g045990.2N, BniB08g046000.2N, BniB08g046020.2N, BniB08g046030.2N, BniB08g046390.2N, BniB08g046400.2N, BniB08g046410.2N, BniB08g046420.2N, BniB08g046910.2N, BniB08g064690.2N, BniB08g064700.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1362, Ceq04G0101, Ceq04G0102, Ceq04G0106, Ceq04G0107
Casuarinaceae	Casuarina glauca	8	Cgl04G0068, Cgl04G0158, Cgl04G0159, Cgl04G0160, Cgl04G0162 ... Cgl04G0163, Cgl04G0164, Cgl04G0165
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g05820
Dunaliellaceae	Dunaliella salina	1	Dusal.0322s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g03640
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4096
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.158
Plantaginaceae	Plantago ovata	16	Pov_00009428, Pov_00015414, Pov_00015417, Pov_00033074 ... Pov_00034356, Pov_00034357, Pov_00034362, Pov_00038534, Pov_00038537, Pov_00038540, Pov_00038541, Pov_00038546, Pov_00038657, Pov_00038659, Pov_00040324, Pov_00040652
Plumbaginaceae	Limonium bicolor	15	Lb1G07003, Lb2G09700, Lb2G11614, Lb2G12142, Lb2G12143 ... Lb2G14404, Lb2G14405, Lb3G18115, Lb3G18118, Lb5G27665, Lb5G27667, Lb5G27675, Lb5G27676, Lb5G27677, Lb5G27678
Poaceae	Echinochloa crus-galli	43	AH07.1564, AH07.1568, AH08.555, AH08.557, AH08.565, AH08.566 ... AH08.567, AH08.949, BH03.1384, BH03.1386, BH03.1387, BH07.1534, BH07.1535, BH08.587, BH08.590, BH08.591, BH08.593, BH08.594, BH08.596, BH08.600, BH08.601, BH08.608, BH08.612, BH08.613, BH08.614, CH03.1514, CH03.1515, CH05.3608, CH07.1315, CH08.673, CH08.675, CH08.677, CH08.678, CH08.679, CH08.692, CH08.693, CH08.697, CH08.698, CH08.699, CH08.706, CH08.713, CH08.715, CH08.716
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_2AG0111110, gene-QOZ80_8AG0620240 ... gene-QOZ80_8AG0620260, gene-QOZ80_8AG0620300, gene-QOZ80_8AG0620310, gene-QOZ80_8AG0620380, gene-QOZ80_8BG0647640, gene-QOZ80_8BG0647940, gene-QOZ80_8BG0647950, gene-QOZ80_8BG0647970, gene-QOZ80_8BG0647990, gene-QOZ80_8BG0648040, gene-QOZ80_8BG0648120, gene-QOZ80_9AG0676810
Poaceae	Hordeum vulgare	16	HORVU.MOREX.r3.1HG0005410.1, HORVU.MOREX.r3.2HG0103950.1 ... HORVU.MOREX.r3.2HG0114600.1, HORVU.MOREX.r3.2HG0121590.1, HORVU.MOREX.r3.2HG0121610.1, HORVU.MOREX.r3.2HG0171170.1, HORVU.MOREX.r3.2HG0193020.1, HORVU.MOREX.r3.3HG0308900.1, HORVU.MOREX.r3.3HG0308950.1, HORVU.MOREX.r3.5HG0440530.1, HORVU.MOREX.r3.5HG0525210.1, HORVU.MOREX.r3.5HG0525220.1, HORVU.MOREX.r3.5HG0527790.1, HORVU.MOREX.r3.6HG0609760.1, HORVU.MOREX.r3.6HG0609790.1, HORVU.MOREX.r3.7HG0667500.1
Poaceae	Lolium multiflorum	43	gene-QYE76_001794, gene-QYE76_006656, gene-QYE76_009677 ... gene-QYE76_010091, gene-QYE76_010525, gene-QYE76_013267, gene-QYE76_014324, gene-QYE76_014423, gene-QYE76_019608, gene-QYE76_019610, gene-QYE76_020760, gene-QYE76_021734, gene-QYE76_032933, gene-QYE76_032957, gene-QYE76_032974, gene-QYE76_032975, gene-QYE76_032976, gene-QYE76_032980, gene-QYE76_032981, gene-QYE76_033878, gene-QYE76_034865, gene-QYE76_034867, gene-QYE76_037206, gene-QYE76_038006, gene-QYE76_047272, gene-QYE76_049140, gene-QYE76_049527, gene-QYE76_056465, gene-QYE76_056473, gene-QYE76_057194, gene-QYE76_060833, gene-QYE76_060837, gene-QYE76_060838, gene-QYE76_060839, gene-QYE76_060856, gene-QYE76_060866, gene-QYE76_060868, gene-QYE76_060870, gene-QYE76_060872, gene-QYE76_067742, gene-QYE76_067744, gene-QYE76_067762, gene-QYE76_067763
Poaceae	Oryza coarctata	8	Oco03G008760, Oco03G008780, Oco04G009170, Oco04G009200 ... Oco15G003790, Oco15G003820, Oco16G003700, Oco24G005840
Poaceae	Oryza sativa	18	LOC_Os02g21240.1, LOC_Os02g21260.1, LOC_Os08g09220.1 ... LOC_Os08g09380.1, LOC_Os08g09390.1, LOC_Os08g09410.1, LOC_Os08g09420.1, LOC_Os08g09450.1, LOC_Os08g09460.1, LOC_Os08g09470.1, LOC_Os08g09480.1, LOC_Os08g09580.1, LOC_Os08g09590.1, LOC_Os08g09600.1, LOC_Os08g09640.1, LOC_Os08g09650.1, LOC_Os08g09670.1, LOC_Os11g41860.1
Poaceae	Paspalum vaginatum	16	gene-BS78_03G060000, gene-BS78_07G074600 ... gene-BS78_07G074800, gene-BS78_07G074900, gene-BS78_07G075100, gene-BS78_07G075500, gene-BS78_07G075600, gene-BS78_07G075700, gene-BS78_07G075800, gene-BS78_07G075900, gene-BS78_07G076700, gene-BS78_07G076800, gene-BS78_07G093100, gene-BS78_07G126400, gene-BS78_07G126500, gene-BS78_09G015200
Poaceae	Puccinellia tenuiflora	24	Pt_Chr0200734, Pt_Chr0202455, Pt_Chr0202457, Pt_Chr0202464 ... Pt_Chr0203048, Pt_Chr0306039, Pt_Chr0402278, Pt_Chr0402452, Pt_Chr0402453, Pt_Chr0404258, Pt_Chr0404259, Pt_Chr0405755, Pt_Chr0405756, Pt_Chr0500725, Pt_Chr0500726, Pt_Chr0500727, Pt_Chr0500728, Pt_Chr0501480, Pt_Chr0600342, Pt_Chr0600383, Pt_Chr0601426, Pt_Chr0601484, Pt_Chr0605373, Pt_Chr0701257
Poaceae	Sporobolus alterniflorus	4	Chr06G030750, Chr15G022190, Chr16G002550, Chr17G002250
Poaceae	Thinopyrum elongatum	24	Tel1E01G071900, Tel1E01G232800, Tel2E01G038100 ... Tel2E01G038200, Tel2E01G158500, Tel2E01G158900, Tel2E01G307100, Tel2E01G550400, Tel3E01G651300, Tel3E01G651600, Tel3E01G652400, Tel3E01G652700, Tel3E01G663800, Tel3E01G663900, Tel3E01G664000, Tel5E01G153500, Tel5E01G174800, Tel5E01G453900, Tel5E01G747800, Tel6E01G030700, Tel7E01G354400, Tel7E01G354900, Tel7E01G524600, Tel7E01G652300
Poaceae	Triticum dicoccoides	34	gene_TRIDC1AG003490, gene_TRIDC1AG018470 ... gene_TRIDC1BG004340, gene_TRIDC2AG007920, gene_TRIDC2AG014330, gene_TRIDC2AG019300, gene_TRIDC2AG045610, gene_TRIDC2BG000910, gene_TRIDC2BG009350, gene_TRIDC2BG017310, gene_TRIDC2BG023130, gene_TRIDC2BG048540, gene_TRIDC3AG058390, gene_TRIDC3AG058410, gene_TRIDC3AG058420, gene_TRIDC3AG059190, gene_TRIDC3AG059210, gene_TRIDC3AG059230, gene_TRIDC3BG065420, gene_TRIDC3BG066560, gene_TRIDC3BG066580, gene_TRIDC3BG066600, gene_TRIDC5AG011570, gene_TRIDC5BG013530, gene_TRIDC5BG072570, gene_TRIDC6AG043020, gene_TRIDC6BG050420, gene_TRIDC6BG050430, gene_TRIDC7AG024060, gene_TRIDC7AG042570, gene_TRIDC7AG045360, gene_TRIDC7AG053610, gene_TRIDC7BG033710, gene_TRIDC7BG046280
Poaceae	Triticum aestivum	70	TraesCS1A02G033100.1, TraesCS1A02G128000.1 ... TraesCS1B02G041200.1, TraesCS1D02G034100.1, TraesCS1D02G126200.1, TraesCS2A02G071400.1, TraesCS2A02G119000.1, TraesCS2A02G153600.1, TraesCS2A02G313400.1, TraesCS2B02G085200.1, TraesCS2B02G085400.1, TraesCS2B02G178700.1, TraesCS2B02G332200.1, TraesCS2B02G385500.1, TraesCS2D02G011000.1, TraesCS2D02G070200.1, TraesCS2D02G159000.1, TraesCS2D02G311900.1, TraesCS3A02G410000.1, TraesCS3A02G410100.1, TraesCS3A02G410500.1, TraesCS3A02G410700.1, TraesCS3A02G411000.1, TraesCS3A02G417400.1, TraesCS3A02G417500.1, TraesCS3B02G443100.1, TraesCS3B02G443500.1, TraesCS3B02G443800.1, TraesCS3B02G444000.1, TraesCS3B02G452300.1, TraesCS3B02G452400.1, TraesCS3B02G452500.1, TraesCS3B02G452600.1, TraesCS3B02G452700.1, TraesCS3D02G405300.1, TraesCS3D02G412900.1, TraesCS3D02G413000.1, TraesCS3D02G413100.1, TraesCS4B02G183700.1, TraesCS4B02G183800.1, TraesCS4D02G274100.1.cds1, TraesCS5A02G075400.1, TraesCS5A02G471800.1, TraesCS5B02G081700.1, TraesCS5B02G094800.1, TraesCS5B02G284300.1, TraesCS5B02G466500.1.cds1, TraesCS5B02G484100.1, TraesCS5B02G484200.1, TraesCS5B02G484300.1, TraesCS5B02G484500.1, TraesCS5B02G484600.1, TraesCS5D02G088900.1, TraesCS5D02G100900.1, TraesCS5D02G292400.1, TraesCS5D02G468200.1, TraesCS5D02G484100.1, TraesCS5D02G484300.1, TraesCS6B02G310200.1, TraesCS7A02G193100.1, TraesCS7A02G304900.1, TraesCS7A02G484100.1.cds1, TraesCS7B02G098400.1, TraesCS7B02G205200.1, TraesCS7B02G287400.1, TraesCS7D02G194300.1, TraesCS7D02G194400.1, TraesCS7D02G300400.1, TraesCS7D02G320200.1.cds1, TraesCS7D02G381100.1
Poaceae	Zea mays	4	Zm00001eb354560_P001, Zm00001eb413420_P001 ... Zm00001eb413520_P001, Zm00001eb417460_P001
Poaceae	Zoysia japonica	6	nbis-gene-27552, nbis-gene-38890, nbis-gene-38891 ... nbis-gene-38894, nbis-gene-45259, nbis-gene-57377
Poaceae	Zoysia macrostachya	7	Zma_g12646, Zma_g15926, Zma_g22606, Zma_g22607, Zma_g22610 ... Zma_g22613, Zma_g22614
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.2666, evm.TU.LG04.1140, evm.TU.LG05.1681 ... evm.TU.LG05.772, evm.TU.LG23.889, evm.TU.LG25.553
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g05100
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_14_RagTag.944
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16716, nbisL1-mrna-16792
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-10238
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-17250
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000025l.115
Rhizophoraceae	Kandelia obovata	1	Maker00012339
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-8650
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-9166
Salicaceae	Populus euphratica	1	populus_peu17631
Solanaceae	Lycium barbarum	12	gene-LOC132609366, gene-LOC132609371, gene-LOC132609381 ... gene-LOC132609382, gene-LOC132609383, gene-LOC132609390, gene-LOC132609641, gene-LOC132609642, gene-LOC132611436, gene-LOC132612144, gene-LOC132612148, gene-LOC132621844
Solanaceae	Solanum chilense	4	SOLCI001177800, SOLCI001691500, SOLCI006070400 ... SOLCI006559900
Solanaceae	Solanum pennellii	12	gene-LOC107014973, gene-LOC107026818, gene-LOC107027046 ... gene-LOC107027047, gene-LOC107027227, gene-LOC107027270, gene-LOC107027418, gene-LOC107027422, gene-LOC107027423, gene-LOC107027462, gene-LOC107028279, gene-LOC107028318
Tamaricaceae	Reaumuria soongarica	1	STRG.18317_chr09_-
Tamaricaceae	Tamarix chinensis	1	TC07G1902
Zosteraceae	Zostera marina	6	Zosma03g04230.v3.1, Zosma06g01200.v3.1, Zosma06g11830.v3.1 ... Zosma06g24270.v3.1, Zosma06g24370.v3.1, Zosma06g28070.v3.1