Basic Information
Locus ID:
nbisL1-mrna-9156
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 10725284 | 10731429 | - | nbisL1-mrna-9156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 100,051.50 Da | 61.35 | 78.33 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 659 | 695 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 744 | 779 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 74 | 340 | 8.62E-21 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 570 | 863 | 4.58E-49 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 78 | 345 | 7.8E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 548 | 879 | 4.9E-115 | IPR015943 |
| SMART | SM00220 | serkin_6 | 7 | 335 | 8.8E-5 | IPR000719 |
| SMART | SM00320 | WD40_4 | 563 | 602 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 698 | 737 | 0.77 | IPR001680 |
| SMART | SM00320 | WD40_4 | 655 | 695 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 741 | 779 | 2.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 616 | 652 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 787 | 826 | 9.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 748 | 781 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 748 | 781 | 9.968326 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 662 | 704 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 662 | 699 | 10.469233 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 335 | 11.580707 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 766 | 780 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 682 | 696 | 4.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 766 | 780 | 4.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 639 | 653 | 4.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 31 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_021655518.1 | protein SPA1-RELATED 3-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKH1 | Protein SPA1-RELATED 3 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology