Basic Information
Locus ID:
nbisL1-mrna-9144
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 10876511 | 10886089 | - | nbisL1-mrna-9144 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 151,564.16 Da | 43.23 | 70.74 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09810 | LPOR_like_SDR_c_like | 1066 | 1378 | 0.0 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 538 | 573 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 431 | 463 | 8.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 579 | 616 | 0.0014 | IPR001680 |
| Pfam | PF00106 | short chain dehydrogenase | 1069 | 1211 | 1.1E-18 | IPR002347 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1068 | 1344 | 1.2E-36 | IPR036291 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 428 | 754 | 2.17E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 418 | 779 | 2.8E-57 | IPR015943 |
| Gene3D | G3DSA:3.40.50.720 | - | 1056 | 1379 | 9.7E-56 | - |
| SMART | SM00320 | WD40_4 | 664 | 709 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 616 | 3.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 425 | 464 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 710 | 751 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 619 | 657 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 536 | 574 | 7.4E-9 | IPR001680 |
| TIGRFAM | TIGR01289 | LPOR: light-dependent protochlorophyllide reductase | 1065 | 1379 | 7.2E-173 | IPR005979 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 583 | 617 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 543 | 583 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 432 | 465 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 583 | 617 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 432 | 473 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 543 | 577 | 10.495596 | - |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 1276 | 1293 | 7.9E-7 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 1143 | 1154 | 7.9E-7 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 1068 | 1085 | 7.9E-7 | IPR002347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| Coils | Coil | Coil | 7 | 48 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021594595.1 | WD repeat-containing protein 44 [Manihot esculenta] | 0 |
| Q41249 | Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus OX=3659 GN=PORA PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N5KW39 | NADPH-protochlorophyllide oxidoreductase OS=Salix brachista OX=2182728 GN=DKX38_017750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24227 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12440, gene_25861 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008206, Ah037312 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g087610, BVRB_9g208630 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11843, Sbi_jg18713, Sbi_jg37153, Sbi_jg46568 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21075, Seu_jg4975 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006919, GOSA_00021008 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23057, Sgl28171, Sgl80177, Sgl82626 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010826, gene:ENSEOMG00000016523 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0020130, CQ.Regalona.r1.4BG0020820 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30019630 |
| Apiaceae | Apium graveolens | 2 | Ag11G03379, Ag3G00358 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696187 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3330.V1.1, AsparagusV1_04.3331.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G00743, Ftri18G23473, Ftri3G06824 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G03630.1, AT4G27440.1, AT5G54190.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007802m.g.v1.0, Thhalv10025367m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g02540.v2.2, Sp6g16250.v2.2, Sp7g25390.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g082950.2N, BniB03g000570.2N, BniB05g009950.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1089, Ceq02G2587 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1266, Cgl02G2670 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01730 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0059s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g08850, gene.Thate08g23230, gene.Thate08g23240 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1066 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1883, evm.TU.LG05.1644 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004509, Pov_00009068 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.1708, AH09.2717, BH01.1909, BH09.2958, CH01.2015 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0241450, gene-QOZ80_3BG0286660 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0047060.1, HORVU.MOREX.r3.2HG0209470.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011814, gene-QYE76_047553 |
| Poaceae | Oryza coarctata | 4 | Oco07G019350, Oco08G018620, Oco19G007040, Oco20G007010 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g58200.1, LOC_Os10g35370.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G188400, gene-BS78_02G359500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307121 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G029790, Chr12G009730, Chr23G000800, Chr26G018490 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G306100, Tel2E01G966000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG026050, gene_TRIDC1BG030950 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G171000.1, TraesCS1B02G186300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb044650_P001, Zm00001eb066060_P003 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2225, nbis-gene-3860, nbis-gene-6205 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1619, Zma_g22234, Zma_g4006 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.693, evm.TU.LG06.1002, evm.TU.LG09.1859 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g04180, gene.Posoc10g10610 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.195, evm.TU.Scaffold_9_RagTag.1263 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11201, nbisL1-mrna-20905, nbisL1-mrna-21916 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-8711, nbisL1-mrna-9592 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10597, nbisL1-mrna-21248 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.780, evm.TU.utg000006l.124 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009399, Maker00013044 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1274, nbisL1-mrna-9144 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-4809, nbisL1-mrna-7107 |
| Salicaceae | Populus euphratica | 2 | populus_peu16871, populus_peu16872 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616645, gene-LOC132628742, gene-LOC132636485 |
| Solanaceae | Solanum chilense | 3 | SOLCI002779500, SOLCI002997700, SOLCI006095700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002266, gene-LOC107007153, gene-LOC107025879 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29982_chr10_+, gene_7692 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0336, TC07G0248 |
| Zosteraceae | Zostera marina | 2 | Zosma01g35110.v3.1, Zosma05g24050.v3.1 |