Basic Information
Locus ID:
nbisL1-mrna-9139
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002106F_pilon | 4469192 | 4473401 | - | nbisL1-mrna-9139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 42,302.61 Da | 45.36 | 89.50 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 8 | 36 | 4.1E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 108 | 137 | 3.5E-6 | IPR002885 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 308 | 377 | 3.07E-6 | IPR036322 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 58 | 7.6E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 59 | 138 | 1.7E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 139 | 257 | 1.9E-6 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 265 | 377 | 9.4E-8 | IPR015943 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 108 | 138 | 6.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 8 | 40 | 5.9E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 106 | 140 | 9.733692 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 295 | 337 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 5 | 39 | 10.380408 | IPR002885 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 315 | 329 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19191.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021598696.2 | pentatricopeptide repeat-containing protein At3g12770 [Manihot esculenta] | 0 |
| P0C8Q2 | Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6LZK6 | DYW_deaminase domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_005619 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah009743 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12129, Sbi_jg47069 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21351 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020368 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl61527, Sgl61549 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000040006 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0003540, CQ.Regalona.r1.9AG0021020 |
| Apiaceae | Apium graveolens | 1 | Ag11G04930 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0007 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1072, evm.TU.LG12.90 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1195, evm.TU.LG22.952 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.926 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16686, nbisL1-mrna-16759 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10433 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17232 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000025l.48 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012187 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-20187, nbisL1-mrna-20188, nbisL1-mrna-20591 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-9137, nbisL1-mrna-9139, nbisL1-mrna-9140 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1063 |
| Zosteraceae | Zostera marina | 3 | Zosma03g32740.v3.1, Zosma03g32750.v3.1, Zosma03g32810.v3.1 |