Basic Information
Locus ID:
nbisL1-mrna-9117
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 2887621 | 2891849 | + | nbisL1-mrna-9117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 42,729.72 Da | 28.32 | 100.91 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 263 | 363 | 3.12779E-28 | - |
| Pfam | PF00168 | C2 domain | 261 | 362 | 1.6E-25 | IPR000008 |
| Pfam | PF00168 | C2 domain | 152 | 208 | 4.5E-10 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 256 | 380 | 1.46E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 152 | 210 | 1.47E-11 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 245 | 380 | 3.6E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 142 | 223 | 2.3E-12 | IPR035892 |
| SMART | SM00239 | C2_3c | 104 | 211 | 3.7E-5 | IPR000008 |
| SMART | SM00239 | C2_3c | 262 | 360 | 1.6E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 361 | 20.953514 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 85 | 212 | 11.586372 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 18 | 236 | 12.267246 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 278 | 290 | 1.8E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 304 | 317 | 1.8E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 326 | 334 | 1.8E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015572574.1 | synaptotagmin-4 [Ricinus communis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | B9RP17 | Calcium lipid binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0923310 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology