Basic Information
Locus ID:
nbisL1-mrna-9114
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 9508649 | 9511456 | - | nbisL1-mrna-9114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 43,127.75 Da | 53.89 | 65.39 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 83 | 168 | 2.61429E-48 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 295 | 359 | 4.3776E-19 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 87 | 168 | 2.2E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 295 | 362 | 2.4E-11 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 75 | 178 | 3.27E-31 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 292 | 363 | 1.06E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 279 | 377 | 1.1E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 73 | 179 | 1.5E-26 | IPR036431 |
| SMART | SM01014 | ARID_2 | 78 | 168 | 3.8E-32 | - |
| SMART | SM00398 | hmgende2 | 294 | 363 | 1.0E-12 | IPR009071 |
| SMART | SM00501 | bright_3 | 82 | 173 | 8.0E-35 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 81 | 172 | 25.588108 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 295 | 362 | 13.509895 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 68 | - | - |
| Coils | Coil | Coil | 351 | 371 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021284740.1 | - | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K8Z6 | Uncharacterized protein MANES_18G008500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology