Basic Information
Locus ID:
nbisL1-mrna-9061
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 59462616 | 59469389 | - | nbisL1-mrna-9061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 82,631.82 Da | 35.78 | 89.45 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 44 | 347 | 4.59587E-164 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 365 | 663 | 3.06926E-160 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 370 | 659 | 3.7E-33 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 79 | 342 | 2.8E-6 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 365 | 663 | 5.76E-43 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 43 | 346 | 1.99E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 363 | 663 | 3.0E-47 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 43 | 346 | 4.1E-36 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 44 | 348 | 37.415051 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 364 | 664 | 36.172672 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_039026948.1 | glycerophosphodiester phosphodiesterase GDPDL3-like isoform X1 [Hibiscus syriacus] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6A2YLP4 | glycerophosphodiester phosphodiesterase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111392pilonHSYRG00510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology