Basic Information
Locus ID:
nbisL1-mrna-9061
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 8709347 | 8716072 | - | nbisL1-mrna-9061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 63,476.60 Da | 41.49 | 69.01 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 425 | 549 | 7.0034E-37 | IPR033734 |
| CDD | cd09612 | Jacalin | 233 | 363 | 2.57937E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 54 | 168 | 1.13806E-29 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 417 | 549 | 9.0E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 233 | 363 | 3.5E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 77 | 169 | 1.6E-18 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 406 | 548 | 3.66E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 41 | 169 | 8.37E-25 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 222 | 362 | 3.92E-38 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 210 | 363 | 3.2E-47 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 400 | 549 | 2.1E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 30 | 170 | 1.3E-29 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 40 | 169 | 5.7E-10 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 417 | 550 | 2.1E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 233 | 364 | 7.9E-32 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 406 | 550 | 49.820251 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 28 | 169 | 23.511595 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 222 | 364 | 46.518772 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.2 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021667091.1 | jacalin-related lectin 3-like [Hevea brasiliensis] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6MAU4 | Jacalin-related lectin 3-like OS=Hevea brasiliensis OX=3981 GN=GH714_006156 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology