Basic Information
Locus ID:
nbisL1-mrna-9040
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 59333436 | 59333861 | - | nbisL1-mrna-9040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 15,872.31 Da | 39.20 | 105.75 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 2 | 115 | 2.6E-25 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 117 | 3.51E-39 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 36 | 133 | 4.2E-28 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 35 | 3.4E-10 | - |
| SMART | SM00220 | serkin_6 | 1 | 136 | 0.0011 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 141 | 23.156452 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 81 | 93 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55830.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_039055781.1 | probable L-type lectin-domain containing receptor kinase S.7 [Hibiscus syriacus] | 0 |
| Q9FHG4 | Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana OX=3702 GN=LECRKS7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J8WMK3 | Protein kinase domain-containing protein (Fragment) OS=Gossypium aridum OX=34290 GN=Goari_017766 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB02g004720.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g23980 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3918, nbisL1-mrna-9040 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G004560 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-56584 |