Basic Information
Locus ID:
nbisL1-mrna-9040
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Protein of unknown function (DUF632)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 2417893 | 2420079 | + | nbisL1-mrna-9040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 52,583.50 Da | 53.06 | 69.35 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04783 | Protein of unknown function (DUF630) | 1 | 58 | 2.3E-22 | IPR006868 |
| Pfam | PF04782 | Protein of unknown function (DUF632) | 300 | 474 | 2.7E-60 | IPR006867 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 89 | - | - |
| Coils | Coil | Coil | 120 | 140 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25590.1 | Protein of unknown function (DUF630 and DUF632). | 0 |
| RefSeq | XP_012077462.1 | protein ALTERED PHOSPHATE STARVATION RESPONSE 1 [Jatropha curcas] | 0 |
| Q9AQW1 | Protein ROLLING AND ERECT LEAF 2 OS=Oryza sativa subsp. japonica OX=39947 GN=REL2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067KR10 | Nitrate regulatory gene2 protein-like OS=Jatropha curcas OX=180498 GN=JCGZ_07795 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18170, jg7865 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13255, gene_26143 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010741, Ah034872 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g031650, BVRB_9g220720 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11423, Sbi_jg21028, Sbi_jg22761, Sbi_jg46377 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16635, Seu_jg20704 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005280, GOSA_00018249 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl55904, Sgl61093, Sgl62434, Sgl66976 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000017478, gene:ENSEOMG00000018365 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0016570, CQ.Regalona.r1.2BG0018390 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30125500, pistato.v30253280 |
| Apiaceae | Apium graveolens | 3 | Ag10G02205, Ag6G01319, Ag9G01146 |
| Arecaceae | Cocos nucifera | 4 | COCNU_12G004420, COCNU_16G001050, scaffold002164G000020 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695745, gene-LOC103714416, gene-LOC103720359 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1461.V1.1, AsparagusV1_05.621.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G10828, Ftri4G22733 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G52320.2, AT5G25590.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003682m.g.v1.0, Thhalv10011250m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g38900.v2.2, Sp2g21940.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g078120.2N, BniB04g057510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2131, Ceq05G0262 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2335 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g03250, gene.Cymno10g06160, gene.Cymno14g09790 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g10090, gene.Thate02g36890 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3218, nbisL1-mrna-7412 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.359, evm.TU.LG07.1358 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00013652, Pov_00015418, Pov_00024966 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18449, Lb3G21342 |
| Poaceae | Echinochloa crus-galli | 9 | AH05.2081, AH05.2578, BH03.712, BH05.2214, BH05.2215 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1BG0064850, gene-QOZ80_5AG0374340 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0064160.1, HORVU.MOREX.r3.2HG0122080.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_013445, gene-QYE76_013480, gene-QYE76_017584 ... |
| Poaceae | Oryza coarctata | 6 | Oco01G010790, Oco02G011710, Oco09G008880, Oco10G009020 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g31580.1, LOC_Os05g32760.1, LOC_Os07g11070.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G102000, gene-BS78_09G134300, gene-BS78_K057600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0303882, Pt_Chr0505141, Pt_Chr0505387 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G012530, Chr01G021130, Chr12G016830, Chr12G024200 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G006400, Tel1E01G409000, Tel2E01G309400 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG037140, gene_TRIDC1BG042120 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G247500.1, TraesCS1B02G258100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb132150_P003, Zm00001eb303290_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14524, nbis-gene-26653, nbis-gene-52843 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g26414, Zma_g26807, Zma_g28190, Zma_g6184 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG07.1704, evm.TU.LG07.634, evm.TU.LG08.1677 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g06660, gene.Posoc06g17430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1269 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13692, nbisL1-mrna-6987 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11915, nbisL1-mrna-13887 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8852, nbisL1-mrna-9040 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.121, evm.TU.utg000033l.576 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003904, Maker00014769 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16386, nbisL1-mrna-3823 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18002, nbisL1-mrna-7924 |
| Salicaceae | Populus euphratica | 5 | populus_peu02758, populus_peu02759, populus_peu04859 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633337, gene-LOC132635675 |
| Solanaceae | Solanum chilense | 1 | SOLCI003331900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015170, gene-LOC107028786 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.21287_chr09_-, STRG.4148_chr03_-, gene_10897 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G1677, TC08G2049, TC10G1967 |
| Zosteraceae | Zostera marina | 2 | Zosma03g29360.v3.1, Zosma06g22480.v3.1 |