Basic Information
Locus ID:
nbisL1-mrna-9024
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002106F_pilon | 925582 | 932031 | - | nbisL1-mrna-9024 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 38,738.16 Da | 41.51 | 83.69 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 287 | 335 | 2.2E-8 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 283 | 340 | 2.23E-15 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 255 | 6.28E-23 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 266 | 344 | 1.7E-15 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 24 | 257 | 3.6E-13 | IPR027267 |
| SMART | SM00326 | SH3_2 | 283 | 338 | 8.2E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 280 | 339 | 20.2505 | IPR001452 |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 145 | 175 | - | - |
| Coils | Coil | Coil | 189 | 223 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_002519892.1 | SH3 domain-containing protein 2 [Ricinus communis] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | B9S1M7 | Clathrin binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0866570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology