Basic Information
Locus ID:
nbisL1-mrna-9020
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002106F_pilon | 860527 | 872421 | - | nbisL1-mrna-9020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 74,076.39 Da | 48.55 | 92.86 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 74 | 314 | 5.18053E-118 | - |
| Pfam | PF16124 | RecQ zinc-binding | 424 | 480 | 3.2E-11 | IPR032284 |
| Pfam | PF09382 | RQC domain | 487 | 589 | 1.9E-5 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 93 | 197 | 1.1E-11 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 72 | 307 | 2.66E-33 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 313 | 516 | 1.0E-24 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 46 | 219 | 7.3E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 238 | 314 | 4.6E-26 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 315 | 396 | 4.5E-17 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 485 | 586 | 7.6E-23 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 397 | 481 | 3.1E-17 | IPR027417 |
| SMART | SM00956 | RQC_2 | 489 | 586 | 0.0049 | IPR018982 |
| SMART | SM00487 | ultradead3 | 87 | 323 | 1.5E-24 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 332 | 505 | 9.01013 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 99 | 307 | 21.122213 | IPR014001 |
| Coils | Coil | Coil | 10 | 37 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.6 | - | 0 |
| RefSeq | XP_012075080.1 | - | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AD95 | ATP-dependent DNA helicase OS=Nyssa sinensis OX=561372 GN=F0562_035560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology