Basic Information
Locus ID:
nbisL1-mrna-9004
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 2691586 | 2696173 | + | nbisL1-mrna-9004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 56,771.71 Da | 64.08 | 88.86 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 237 | 280 | 8.8996E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 12 | 163 | 4.92702E-55 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 237 | 280 | 1.4E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 82 | 146 | 4.0E-8 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 85 | 161 | 2.75E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 293 | 2.5E-17 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 24 | 158 | 1.3E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 285 | 3.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 238 | 279 | 2.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 238 | 280 | 12.312242 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_025015662.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Ricinus communis] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KRX0 | Receptor homology region transmembrane domain-and RING domain-containing protein 2-like isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology