Basic Information
Locus ID:
nbisL1-mrna-9003
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002106F_pilon | 607783 | 622166 | + | nbisL1-mrna-9003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 125,276.62 Da | 49.23 | 73.55 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 639 | 695 | 2.56129E-29 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 640 | 694 | 9.1E-10 | IPR023780 |
| Pfam | PF01426 | BAH domain | 396 | 508 | 1.3E-13 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 704 | 1062 | 1.8E-37 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 529 | 1065 | 1.28E-80 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 634 | 700 | 1.32E-12 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 331 | 495 | 2.6E-46 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 858 | 1031 | 4.8E-244 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 532 | 1082 | 4.8E-244 | - |
| SMART | SM00298 | chromo_7 | 639 | 698 | 1.7E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 394 | 510 | 4.2E-26 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 708 | 1061 | 1.6E-32 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 530 | 1072 | 47.250164 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 394 | 510 | 19.906023 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 640 | 693 | 12.593701 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 663 | 683 | - | IPR023779 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1047 | 1065 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 710 | 722 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 753 | 767 | 2.5E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 799 | 812 | 2.5E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 531 | 547 | 2.5E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.1 | chromomethylase 2. | 0 |
| RefSeq | XP_021652345.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X3 [Hevea brasiliensis] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2K2B4M4 | Cytosine-specific methyltransferase OS=Populus trichocarpa OX=3694 GN=POPTR_003G100000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology