Basic Information
Locus ID:
nbisL1-mrna-9003
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Probably inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 2120960 | 2123449 | + | nbisL1-mrna-9003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 91,555.87 Da | 35.73 | 102.06 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 73 | 1.9E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 246 | 305 | 4.8E-11 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 341 | 401 | 6.0E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 149 | 209 | 9.7E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 485 | 544 | 4.2E-10 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 713 | 811 | 3.6E-11 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 705 | 811 | 3.9E-18 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 53 | 311 | 3.23E-46 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 226 | 596 | 1.18E-72 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 148 | 214 | 1.1E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 147 | 1.2E-24 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 680 | 825 | 3.8E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 215 | 315 | 4.2E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 317 | 629 | 1.4E-84 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 244 | 267 | 70.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 531 | 554 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 101 | 125 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 340 | 364 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 268 | 292 | 4.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 460 | 483 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 366 | 388 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 196 | 220 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 148 | 172 | 43.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 701 | 829 | 11.905788 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 294 | 316 | 7.095899 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 151 | 164 | 8.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 292 | 305 | 8.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25790.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_012077378.1 | probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Jatropha curcas] | 0 |
| O82318 | Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1 OS=Arabidopsis thaliana OX=3702 GN=SKM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KDG3 | Protein kinase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_07733 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23885, jg36707 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13219 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035005 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g032540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20936, Sbi_jg22850 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16709 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018184 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62272, Sgl66821 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016543, gene:ENSEOMG00000049877 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0015390, CQ.Regalona.r1.2BG0017440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253900 |
| Apiaceae | Apium graveolens | 1 | Ag6G01296 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G000730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710284 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G20857 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G25790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001899m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g05550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g032710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2072 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2266 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.823 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26328 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2316, evm.TU.LG07.1081 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.760 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13731 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4706 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9003 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.531 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014658 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3854 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7965 |
| Salicaceae | Populus euphratica | 3 | populus_peu04928, populus_peu05268, populus_peu12734 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635824 |
| Solanaceae | Solanum chilense | 1 | SOLCI003797100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028778 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4745_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1768 |