Basic Information
Locus ID:
nbisL1-mrna-8983
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 7848629 | 7850898 | - | nbisL1-mrna-8983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 71,200.50 Da | 52.00 | 62.06 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 304 | 343 | 1.4E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 217 | 280 | 1.1E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 226 | 8.83E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 287 | 1.06E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 296 | 353 | 3.0E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 232 | 2.6E-15 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 586 | 623 | 2.9E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 276 | 517 | 8.0E-71 | - |
| SMART | SM00184 | ring_2 | 148 | 198 | 0.4 | IPR001841 |
| SMART | SM00184 | ring_2 | 242 | 310 | 0.59 | IPR001841 |
| SMART | SM00547 | zf_4 | 564 | 587 | 0.1 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 284 | 350 | 0.001 | IPR002867 |
| SMART | SM00547 | zf_4 | 588 | 612 | 4.3E-5 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 217 | 280 | 6.8E-19 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 144 | 354 | 45.371193 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 586 | 615 | 8.219233 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 194 | 8.71251 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 590 | 609 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_011017274.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI8 [Populus euphratica] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2NHI9 | RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology