Basic Information
Locus ID:
nbisL1-mrna-8980
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 7776894 | 7778801 | - | nbisL1-mrna-8980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 72,556.75 Da | 53.77 | 64.53 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 226 | 289 | 3.8E-11 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 311 | 352 | 3.3E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 362 | 4.74E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 296 | 6.06E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 235 | 4.38E-15 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 285 | 526 | 1.0E-71 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 595 | 632 | 2.1E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 237 | 1.1E-15 | IPR013083 |
| SMART | SM00547 | zf_4 | 597 | 621 | 4.2E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 226 | 289 | 6.9E-19 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 293 | 359 | 1.3E-5 | IPR002867 |
| SMART | SM00547 | zf_4 | 573 | 596 | 0.083 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 153 | 368 | 45.260292 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 595 | 624 | 8.253109 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 203 | 8.594486 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 599 | 618 | - | IPR001876 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_011017274.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI8 [Populus euphratica] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2NHI9 | RBR-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology