Basic Information
Locus ID:
nbisL1-mrna-897
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001172F_pilon | 6082228 | 6092800 | - | nbisL1-mrna-897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 143,516.66 Da | 45.71 | 77.17 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 675 | 807 | 1.01654E-75 | - |
| CDD | cd17920 | DEXHc_RecQ | 487 | 674 | 1.64569E-86 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 526 | 654 | 1.8E-8 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1056 | 1124 | 6.1E-15 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 691 | 797 | 3.0E-17 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 809 | 890 | 8.9E-16 | IPR032284 |
| Pfam | PF09382 | RQC domain | 898 | 1014 | 4.5E-22 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 462 | 816 | 1.15E-34 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1055 | 1128 | 1.66E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 673 | 940 | 7.98E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 464 | 674 | 4.3E-74 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 898 | 1008 | 3.4E-21 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 675 | 894 | 6.4E-66 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1048 | 1134 | 1.5E-23 | IPR044876 |
| SMART | SM00341 | hrdc7 | 1052 | 1134 | 1.4E-6 | IPR002121 |
| SMART | SM00956 | RQC_2 | 900 | 1011 | 3.8E-26 | IPR018982 |
| SMART | SM00490 | helicmild6 | 717 | 798 | 1.8E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 495 | 683 | 1.0E-16 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 491 | 951 | 4.3E-147 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 707 | 749 | 9.242126 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 495 | 667 | 16.356365 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 692 | 844 | 20.168964 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1052 | 1134 | 18.5989 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 606 | 615 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1135 | 1187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1144 | 1187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 194 | - | - |
| Coils | Coil | Coil | 359 | 386 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021658967.1 | ATP-dependent DNA helicase Q-like 4A [Hevea brasiliensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A251K0S2 | DNA helicase OS=Manihot esculenta OX=3983 GN=MANES_10G122800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology