Basic Information
Locus ID:
nbisL1-mrna-8964
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001135F_pilon | 4394377 | 4395807 | - | nbisL1-mrna-8964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 44,450.86 Da | 37.03 | 106.11 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 59 | 103 | 3.40721E-19 | - |
| Pfam | PF04564 | U-box domain | 55 | 129 | 2.0E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 149 | 372 | 1.68E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 47 | 132 | 4.47E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 138 | 1.5E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 146 | 378 | 7.2E-11 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 58 | 124 | 2.9E-28 | IPR003613 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 15 | 5.0 | - |
| ProSiteProfiles | PS51698 | U-box domain profile. | 54 | 131 | 36.36644 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_034915379.1 | E3 ubiquitin-protein ligase PUB24-like [Populus alba] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7XRP3 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_060755 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology