Basic Information
Locus ID:
nbisL1-mrna-8945
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 1754369 | 1757675 | + | nbisL1-mrna-8945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 47,583.39 Da | 41.98 | 97.16 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 256 | 386 | 1.71945E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 47 | 245 | 3.33196E-134 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 68 | 229 | 8.9E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 269 | 377 | 6.9E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 112 | 397 | 2.55E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 33 | 251 | 9.6E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 252 | 416 | 4.3E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 296 | 377 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 62 | 259 | 4.7E-58 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 43 | 71 | 11.040723 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 74 | 244 | 29.729666 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 255 | 416 | 26.079514 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 190 | 198 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_006338111.1 | PREDICTED: eukaryotic initiation factor 4A-15 [Solanum tuberosum] | 0 |
| Q6Z2Z4 | Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6V7PAC8 | Eukaryotic initiation factor 4A-11 OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS10855 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology