Basic Information
Locus ID:
nbisL1-mrna-8904
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001135F_pilon | 3657625 | 3659330 | - | nbisL1-mrna-8904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 28,485.62 Da | 44.53 | 82.85 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81901 | HCP-like | 88 | 159 | 2.35E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 26 | 181 | 1.0E-6 | IPR011990 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74875.1 | 0 | |
| RefSeq | XP_021686976.1 | putative F-box protein At1g67623 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A6A6MQ51 | F-box protein At1g67623 OS=Hevea brasiliensis OX=3981 GN=GH714_040308 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34784 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_2408, gene_2409, gene_8180 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034870 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg21030, Sbi_jg21031, Sbi_jg3759 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg16630, Seu_jg16631, Seu_jg6226 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018251 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62425, Sgl66973 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0016620 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30228130, pistato.v30228140 |
| Apiaceae | Apium graveolens | 3 | Ag2G01925, Ag4G02808, AgUnG00734 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G07198 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67623.1, AT1G74875.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10019573m.g.v1.0, Thhalv10019642m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g30010.v2.2, SpUn0839_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g011860.2N |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.717, evm.TU.LG10.914 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00016705, Pov_00021747, Pov_00021772, Pov_00021773 ... |
| Plumbaginaceae | Limonium bicolor | 3 | Lb6G31772, Lb6G31773, Lb6G31775 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG07.1280, evm.TU.LG07.633, evm.TU.LG14.812 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1273 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-12462, nbisL1-mrna-12571, nbisL1-mrna-25634 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8904 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613003 |
| Solanaceae | Solanum chilense | 43 | SOLCI000077500, SOLCI000114200, SOLCI000378000 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107006350, gene-LOC114076462, gene-LOC114076563 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0528 |