Basic Information
Locus ID:
nbisL1-mrna-8870
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the GPI family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 57860697 | 57868283 | - | nbisL1-mrna-8870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 60,436.34 Da | 27.92 | 91.89 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05015 | SIS_PGI_1 | 104 | 256 | 3.55627E-39 | IPR035476 |
| CDD | cd05016 | SIS_PGI_2 | 309 | 498 | 1.00399E-53 | IPR035482 |
| Pfam | PF00342 | Phosphoglucose isomerase | 48 | 199 | 9.8E-46 | IPR001672 |
| Pfam | PF00342 | Phosphoglucose isomerase | 221 | 522 | 6.0E-107 | IPR001672 |
| SUPERFAMILY | SSF53697 | SIS domain | 8 | 530 | 9.53E-135 | - |
| Gene3D | G3DSA:3.40.50.10490 | - | 218 | 262 | 2.0E-15 | - |
| Gene3D | G3DSA:3.40.50.10490 | - | 86 | 206 | 1.0E-37 | - |
| Gene3D | G3DSA:3.40.50.10490 | - | 7 | 85 | 2.8E-15 | - |
| Gene3D | G3DSA:3.40.50.10490 | - | 306 | 484 | 9.2E-63 | - |
| Gene3D | G3DSA:1.10.1390.10 | - | 485 | 530 | 4.6E-17 | IPR023096 |
| Gene3D | G3DSA:3.40.50.10490 | - | 263 | 305 | 1.2E-10 | - |
| ProSiteProfiles | PS51463 | Glucose-6-phosphate isomerase family profile. | 10 | 529 | 71.625298 | IPR001672 |
| ProSitePatterns | PS00765 | Phosphoglucose isomerase signature 1. | 237 | 250 | - | IPR018189 |
| ProSitePatterns | PS00174 | Phosphoglucose isomerase signature 2. | 475 | 492 | - | IPR018189 |
| PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 233 | 251 | 4.8E-51 | IPR001672 |
| PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 443 | 461 | 4.8E-51 | IPR001672 |
| PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 133 | 152 | 4.8E-51 | IPR001672 |
| PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 461 | 475 | 4.8E-51 | IPR001672 |
| PRINTS | PR00662 | Glucose-6-phosphate isomerase signature | 475 | 488 | 4.8E-51 | IPR001672 |
| Hamap | MF_00473 | Glucose-6-phosphate isomerase [pgi]. | 8 | 502 | 26.482244 | IPR001672 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00030 (Pentose phosphate pathway)
map00030 (Pentose phosphate pathway)
ko00500 (Starch and sucrose metabolism)
map00500 (Starch and sucrose metabolism)
ko00520 (Amino sugar and nucleotide sugar metabolism)
map00520 (Amino sugar and nucleotide sugar metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42740.1 | Sugar isomerase (SIS) family protein. | 0 |
| RefSeq | XP_039027103.1 | glucose-6-phosphate isomerase, cytosolic [Hibiscus syriacus] | 0 |
| P54242 | Glucose-6-phosphate isomerase, cytosolic 2 OS=Clarkia xantiana OX=3938 GN=PGIC2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0D2Q5F1 | Glucose-6-phosphate isomerase OS=Gossypium raimondii OX=29730 GN=B456_002G128400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11886, jg22864 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004679 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108180 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24322, Sbi_jg8157 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11865 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001735 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl52462, Sgl52516, Sgl57752 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005409, gene:ENSEOMG00000023744 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0000960, CQ.Regalona.r1.5BG0001090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30046360 |
| Apiaceae | Apium graveolens | 2 | Ag11G03127, Ag2G00276 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G019190 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702710 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.683.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G17854, Ftri1G16548 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003173m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g07360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1608 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1734 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01360 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0233s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8870 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.564 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003297, Pov_00013794 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23829 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.80, BH01.560, CH01.538 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0214010, gene-QOZ80_3BG0259130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0007200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008682, gene-QYE76_014907 |
| Poaceae | Oryza coarctata | 2 | Oco06G025890, Oco11G006770 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g56460.1, LOC_Os06g14510.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G063400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502189, Pt_Chr0503684 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G029760, Chr07G028830, Chr12G036100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G086400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG004660, gene_TRIDC1BG006510 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G040600.1, TraesCS1B02G053600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb059230_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15226, nbis-gene-16346 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2658, Zma_g369 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG10.563, evm.TU.LG17.574, evm.TU.LG20.1332 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.571 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19058 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1825 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21835 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.560 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012018 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5869 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12503 |
| Salicaceae | Populus euphratica | 3 | populus_peu02280, populus_peu07049, populus_peu07985 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618765 |
| Solanaceae | Solanum chilense | 1 | SOLCI004276300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007136 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15283 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1332 |
| Zosteraceae | Zostera marina | 1 | Zosma06g02560.v3.1 |