Basic Information
Locus ID:
nbisL1-mrna-8859
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 57791815 | 57792525 | - | nbisL1-mrna-8859 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 25,770.96 Da | 53.50 | 64.58 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 30 | 74 | 1.32511E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 30 | 77 | 4.0E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 29 | 85 | 3.54E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 86 | 1.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 32 | 72 | 2.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 32 | 73 | 13.507235 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 47 | 56 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 117 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | NP_001386772.1 | E3 ubiquitin-protein ligase RNF185-like isoform 1 [Gossypium hirsutum] | 0 |
| Q96GF1 | E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2M8Q1 | RING-type E3 ubiquitin transferase OS=Gossypium tomentosum OX=34277 GN=ES332_D01G137800v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology