Basic Information
Locus ID:
nbisL1-mrna-8843
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 57652863 | 57657141 | + | nbisL1-mrna-8843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 71,509.93 Da | 63.38 | 67.09 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16481 | RING-H2_TTC3 | 615 | 657 | 5.80207E-19 | - |
| Pfam | PF13639 | Ring finger domain | 616 | 657 | 1.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 615 | 659 | 2.54E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 582 | 660 | 7.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 616 | 656 | 2.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 616 | 657 | 12.386007 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 444 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039055654.1 | probable E3 ubiquitin-protein ligase RHG1A [Hibiscus syriacus] | 0 |
| Q9FMM4 | Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2WW21 | RING/U-box superfamily protein, putative isoform 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117056pilonHSYRG00586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg10686, jg1093, jg11612, jg22761, jg26257, jg28663 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036864 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g015820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39381, Sbi_jg54958 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14943 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00015684, GOSA_00015685 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl14596, Sgl19766 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017468, gene:ENSEOMG00000019756 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0018540, CQ.Regalona.r1.1BG0006190 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30045000, pistato.v30213610 |
| Apiaceae | Apium graveolens | 6 | Ag2G00365, Ag2G01477, Ag3G00149, Ag3G00280, Ag4G02806 ... |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G010520, COCNU_08G005100, COCNU_11G000140 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103706500, gene-LOC103710076, gene-LOC103711499 ... |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.134.V1.1, AsparagusV1_02.1820.V1.1 ... |
| Asteraceae | Flaveria trinervia | 5 | Ftri15G02088, Ftri18G06204, Ftri1G14490, Ftri4G09488 ... |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G45180.1, AT2G15530.4, AT4G34040.1, AT5G42940.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10003162m.g.v1.0, Thhalv10011314m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g33980.v2.2, Sp2g07690.v2.2, Sp3g28780.v2.2 ... |
| Brassicaceae | Brassica nigra | 6 | BniB02g060490.2N, BniB03g062400.2N, BniB04g017820.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G1753, Ceq03G1818, Ceq07G2124 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1876, Cgl03G1959, Cgl07G2351 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g02040, gene.Cymno17g04730 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g25530, gene.Thate04g29030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-10044, nbisL1-mrna-12425, nbisL1-mrna-1254 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.410, evm.TU.LG08.493 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007639, Pov_00027588 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20823, Lb5G26824 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2505, BH09.2727, CH09.2924 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0301650, gene-QOZ80_4BG0332360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0204830.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046717 |
| Poaceae | Oryza coarctata | 2 | Oco07G017520, Oco08G016910 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g55510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G258900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300716, Pt_Chr0300770 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G002440, Chr25G002010, Chr26G016910, Chr30G001990 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G872200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG072300, gene_TRIDC2BG078200 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G514400.3, TraesCS2B02G542200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb068540_P001, Zm00001eb432070_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23016 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20557 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.241, evm.TU.LG04.513 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g04590 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.2088, evm.TU.Scaffold_7_RagTag.748 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-19187, nbisL1-mrna-4865, nbisL1-mrna-5898 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-10078, nbisL1-mrna-17844, nbisL1-mrna-4182 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-20682, nbisL1-mrna-3449, nbisL1-mrna-6605 ... |
| Rhizophoraceae | Kandelia candel | 5 | add.evm.TU.utg000009l.273, add.evm.TU.utg000009l.274 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002915, Maker00010643, Maker00016669 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-11411, nbisL1-mrna-18629, nbisL1-mrna-4770 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10013, nbisL1-mrna-14028, nbisL1-mrna-23848 |
| Salicaceae | Populus euphratica | 4 | populus_peu01508, populus_peu01509, populus_peu31998 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132599029, gene-LOC132604090, gene-LOC132606508 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI000181100, SOLCI003771800, SOLCI004019700 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107002386, gene-LOC107004874, gene-LOC107004894 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1735 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2542, TC10G2198 |
| Zosteraceae | Zostera marina | 2 | Zosma03g23410.v3.1, Zosma05g19290.v3.1 |