Basic Information
Locus ID:
nbisL1-mrna-8837
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 1016448 | 1018402 | - | nbisL1-mrna-8837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 63,843.61 Da | 45.73 | 104.40 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 24 | 61 | 2.3E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 88 | 5.63E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 165 | 350 | 3.92E-10 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 64 | 6.6E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 161 | 427 | 3.0E-10 | IPR032675 |
| SMART | SM00256 | fbox_2 | 28 | 67 | 0.006 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13570.2 | - | 0 |
| RefSeq | XP_006427013.1 | F-box/LRR-repeat protein At4g14103 isoform X2 [Citrus clementina] | 0 |
| Q9FZ70 | F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana OX=3702 GN=At1g13570 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LVS2 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology