Basic Information
Locus ID:
nbisL1-mrna-8822
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Ubiquitin-conjugating enzyme E2, catalytic domain homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001135F_pilon | 3154134 | 3155133 | - | nbisL1-mrna-8822 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 27,512.20 Da | 46.70 | 89.38 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 21 | 115 | 8.5E-17 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 124 | 3.85E-21 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 126 | 2.3E-18 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 125 | 0.0014 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 125 | 16.877785 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039046972.1 | - | 0 |
| P52484 | Ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans OX=6239 GN=ubc-21 PE=3 SV=3 | 0 | |
| TrEMBL | A0A836C4X9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1172 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.235 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009039 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17008 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8822 |