Basic Information
Locus ID:
nbisL1-mrna-8803
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 732079 | 738731 | + | nbisL1-mrna-8803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 63,517.00 Da | 45.36 | 80.83 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 62 | 217 | 3.74744E-29 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 431 | 503 | 6.4E-7 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 24 | 367 | 2.8E-107 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 370 | 427 | 3.1E-8 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 96 | 171 | 1.9E-8 | IPR002934 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 370 | 496 | 3.14E-33 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 24 | 216 | 1.67E-47 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 220 | 367 | 1.81E-63 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 24 | 365 | 2.2E-153 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 370 | 485 | 1.9E-22 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 55 | 211 | 2.2E-153 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 16 | 551 | 1.3E-209 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021629092.1 | nuclear poly(A) polymerase 4 isoform X2 [Manihot esculenta] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UZH8 | polynucleotide adenylyltransferase OS=Manihot esculenta OX=3983 GN=MANES_11G032900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology