Basic Information
Locus ID:
nbisL1-mrna-8801
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 57279255 | 57291700 | - | nbisL1-mrna-8801 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 96,167.27 Da | 35.67 | 76.87 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 521 | 620 | 4.51912E-32 | IPR029413 |
| CDD | cd10317 | RGL4_C | 632 | 830 | 5.43542E-56 | - |
| CDD | cd10320 | RGL4_N | 195 | 484 | 7.03195E-79 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 194 | 389 | 6.5E-87 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 630 | 829 | 1.0E-58 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 544 | 609 | 3.3E-22 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 195 | 487 | 1.26E-8 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 519 | 611 | 1.26E-8 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 627 | 830 | 1.19E-46 | IPR008979 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 58 | 1.4E-6 | IPR013083 |
| Gene3D | G3DSA:2.60.120.260 | - | 628 | 830 | 4.1E-19 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 191 | 494 | 1.4E-7 | IPR014718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 113 | 2.1E-8 | IPR013083 |
| Gene3D | G3DSA:2.60.40.1120 | - | 518 | 612 | 6.5E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_040960503.1 | probable rhamnogalacturonate lyase B isoform X1 [Gossypium hirsutum] | 0 |
| TrEMBL | A0A5B6VBJ0 | rhamnogalacturonan endolyase OS=Gossypium australe OX=47621 GN=EPI10_001598 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology