Basic Information
Locus ID:
nbisL1-mrna-8788
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 634367 | 637878 | - | nbisL1-mrna-8788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 60,860.13 Da | 42.31 | 91.65 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 42 | 1.6E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 47 | 5.49E-13 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 145 | 325 | 3.53E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 56 | 334 | 5.7E-18 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 44 | 3.1E-9 | - |
| SMART | SM00256 | fbox_2 | 10 | 49 | 4.9E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 57 | 10.398279 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56400.1 | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_021659682.1 | putative F-box/LRR-repeat protein At3g28410 [Hevea brasiliensis] | 0 |
| Q9FM91 | Putative FBD-associated F-box protein At5g56400 OS=Arabidopsis thaliana OX=3702 GN=At5g56400 PE=4 SV=2 | 0 | |
| TrEMBL | A0A6P9EYU6 | F-box/LRR-repeat protein At3g03360-like OS=Juglans regia OX=51240 GN=LOC109018596 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology