Basic Information
Locus ID:
nbisL1-mrna-8773
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 689253 | 691264 | + | nbisL1-mrna-8773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 37,329.96 Da | 51.73 | 63.85 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 242 | 306 | 3.52975E-16 | - |
| CDD | cd16872 | ARID_HMGB9-like | 31 | 116 | 5.51962E-48 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 242 | 309 | 1.3E-10 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 34 | 116 | 3.0E-19 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 24 | 124 | 6.02E-33 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 239 | 311 | 9.82E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 9 | 129 | 3.5E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 225 | 323 | 9.0E-18 | IPR036910 |
| SMART | SM00398 | hmgende2 | 241 | 310 | 2.1E-10 | IPR009071 |
| SMART | SM00501 | bright_3 | 30 | 121 | 7.5E-38 | IPR001606 |
| SMART | SM01014 | ARID_2 | 26 | 116 | 2.4E-35 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 242 | 309 | 13.863831 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 29 | 120 | 26.418852 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 241 | - | - |
| Coils | Coil | Coil | 295 | 318 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021601209.1 | high mobility group B protein 9 [Manihot esculenta] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K8Z6 | Uncharacterized protein MANES_18G008500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology