Basic Information
Locus ID:
nbisL1-mrna-8747
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 335469 | 336150 | + | nbisL1-mrna-8747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 22,306.31 Da | 36.21 | 97.87 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 89 | 197 | 2.10631E-39 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 3 | 82 | 7.4E-13 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 98 | 197 | 4.7E-19 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 197 | 8.63E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 90 | 8.5E-18 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 91 | 197 | 8.9E-33 | IPR027417 |
| SMART | SM00490 | helicmild6 | 125 | 197 | 2.2E-12 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 101 | 12.131233 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 101 | 197 | 15.373803 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 60 | 68 | - | IPR000629 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_017606208.1 | PREDICTED: eukaryotic initiation factor 4A-10-like [Gossypium arboreum] | 0 |
| P41376 | Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana OX=3702 GN=EIF4A1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FCT8 | Helicase ATP-binding domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g015129mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology