Basic Information
Locus ID:
nbisL1-mrna-8737
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 4668113 | 4670310 | - | nbisL1-mrna-8737 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 61,702.27 Da | 46.16 | 100.71 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 103 | 162 | 1.3E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 322 | 461 | 1.9E-14 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 175 | 8.5E-19 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 325 | 515 | 1.35E-27 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 472 | 1.6E-10 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 274 | 379 | 2.0E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 221 | 1.1E-27 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 304 | 549 | 14.591249 | IPR000719 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 26 | 6.0 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53320.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021680956.1 | probable inactive receptor kinase At2g26730 [Hevea brasiliensis] | 0 |
| Q9FK10 | Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana OX=3702 GN=At5g53320 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6KC42 | Protein kinase domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_007103 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30155410 |
| Apiaceae | Apium graveolens | 2 | Ag2G01689, Ag3G00496 |
| Arecaceae | Cocos nucifera | 1 | scaffold000201G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698808, gene-LOC120109517 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G00878 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1426 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1597 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9058 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1974 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0014450 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.106, evm.TU.Scaffold_8_RagTag.1618 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8737 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-398 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15073 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000028l.32, evm.TU.utg000018l.48 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20483 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23775 |
| Salicaceae | Populus euphratica | 3 | populus_peu17849, populus_peu33589, populus_peu33645 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617527 |
| Solanaceae | Solanum chilense | 1 | SOLCI007445400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025324 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19760.v3.1 |