Basic Information
Locus ID:
nbisL1-mrna-8671
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 1619126 | 1625756 | + | nbisL1-mrna-8671 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 93,619.13 Da | 47.32 | 91.70 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10557 | Cullin protein neddylation domain | 749 | 809 | 1.2E-22 | IPR019559 |
| Pfam | PF00888 | Cullin family | 121 | 718 | 3.9E-206 | IPR001373 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 729 | 817 | 1.9E-26 | IPR036390 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 458 | 728 | 6.8E-102 | IPR036317 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 114 | 457 | 8.11E-108 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 108 | 239 | 5.3E-39 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 460 | 572 | 1.8E-48 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 243 | 356 | 6.4E-35 | - |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 576 | 732 | 1.2E-55 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 744 | 817 | 4.0E-31 | IPR036388 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 357 | 459 | 2.2E-28 | - |
| SMART | SM00182 | cul_2 | 491 | 640 | 3.7E-76 | IPR016158 |
| SMART | SM00884 | Cullin_Nedd8_2 | 746 | 811 | 1.6E-34 | IPR019559 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 461 | 690 | 59.577126 | IPR016158 |
| ProSitePatterns | PS01256 | Cullin family signature. | 790 | 817 | - | IPR016157 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46210.1 | cullin4. Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1. | 0 |
| RefSeq | XP_012072113.1 | cullin-4 [Jatropha curcas] | 0 |
| Q8LGH4 | Cullin-4 OS=Arabidopsis thaliana OX=3702 GN=CUL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF09 | CULLIN_2 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25016, jg38756 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22503 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016502 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40625, Sbi_jg50645 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2202 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016658 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl44929, Sgl49691 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011229, gene:ENSEOMG00000032891 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0009330, CQ.Regalona.r1.8BG0010060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30069590 |
| Apiaceae | Apium graveolens | 1 | Ag6G01121 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020020, COCNU_14G008550 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721243 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_06.1870.V1.1, AsparagusV1_07.3412.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G14032, Ftri18G00555 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46210.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000782m.g.v1.0, Thhalv10024458m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g11070.v2.2, Sp7g15740.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g011130.2N, BniB04g015870.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0272 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0385 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g05650 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1455s00001.v1.0, Dusal.1960s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g22730 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11750, nbisL1-mrna-4694, nbisL1-mrna-8114 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.569 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00012363, Pov_00013134, Pov_00038486 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.139, BH03.3881, CH01.471 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213350, gene-QOZ80_3BG0258480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0516940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061385 |
| Poaceae | Oryza coarctata | 2 | Oco05G025510, Oco06G026370 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g57290.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G057100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107028 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G003300, Chr04G030110, Chr07G029180, Chr12G035160 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G666100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG061530, gene_TRIDC5BG065610 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G425300.1, TraesCS5B02G427400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb059990_P001, Zm00001eb213380_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15283, nbis-gene-16412, nbis-gene-59064 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2617, Zma_g335 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.804, evm.TU.LG23.206 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.895, evm.TU.Scaffold_16_RagTag.817 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24987 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12972, nbisL1-mrna-3872 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17215, nbisL1-mrna-19195 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.81 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016174 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-78, nbisL1-mrna-8671 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10320, nbisL1-mrna-9118 |
| Salicaceae | Populus euphratica | 4 | populus_peu09053, populus_peu09218, populus_peu09227 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621551, gene-LOC132640306 |
| Solanaceae | Solanum chilense | 1 | SOLCI004625500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011416, gene-LOC107011507 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10641_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1043 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30190.v3.1 |