Basic Information
Locus ID:
nbisL1-mrna-8650
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 56135644 | 56143270 | - | nbisL1-mrna-8650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 82,615.39 Da | 54.87 | 78.50 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 572 | 631 | 1.92104E-10 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 569 | 631 | 1.1E-5 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 22 | 261 | 7.61E-17 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 569 | 632 | 8.77E-12 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 563 | 634 | 2.6E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 23 | 293 | 1.3E-22 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 568 | 632 | 5.2E-8 | IPR014720 |
| SMART | SM00577 | forpap2 | 87 | 249 | 1.7E-14 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 567 | 633 | 12.693668 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 28 | 292 | 12.809765 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 370 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_039069079.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Hibiscus syriacus] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5J5X205 | protein-serine/threonine phosphatase OS=Gossypium barbadense OX=3634 GN=ES319_A01G242500v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology