Basic Information
Locus ID:
nbisL1-mrna-8622
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 55830662 | 55837593 | - | nbisL1-mrna-8622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 81,463.14 Da | 40.22 | 81.30 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 409 | 449 | 1.2E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 342 | 390 | 2.5E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 180 | 235 | 1.4E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 396 | 449 | 1.13E-12 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 474 | 540 | 3.5E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 612 | 710 | 7.73E-8 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 598 | 732 | 2.8E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 398 | 473 | 1.2E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 486 | 546 | 1.9E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 487 | 544 | 8.7E-5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 408 | 449 | 7.6E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 406 | 451 | 10.059599 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 409 | 448 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 488 | 543 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 71 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_039062877.1 | uncharacterized protein LOC120207493 isoform X2 [Hibiscus syriacus] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3C0Q6 | Arginine biosynthesis bifunctional protein ArgJ OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00014862pilonHSYRG00007 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology