Basic Information
Locus ID:
nbisL1-mrna-8619
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
HDH
Description:
Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 545750 | 550177 | - | nbisL1-mrna-8619 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 52,556.95 Da | 37.79 | 91.71 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06572 | Histidinol_dh | 80 | 466 | 0.0 | IPR012131 |
| Pfam | PF00815 | Histidinol dehydrogenase | 68 | 474 | 9.2E-158 | IPR012131 |
| SUPERFAMILY | SSF53720 | ALDH-like | 77 | 474 | 5.3E-73 | IPR016161 |
| Gene3D | G3DSA:1.20.5.1300 | - | 145 | 474 | 4.8E-143 | - |
| Gene3D | G3DSA:3.40.50.1980 | Nitrogenase molybdenum iron protein domain | 79 | 435 | 4.8E-143 | - |
| Gene3D | G3DSA:3.40.50.1980 | Nitrogenase molybdenum iron protein domain | 282 | 425 | 4.8E-143 | - |
| TIGRFAM | TIGR00069 | hisD: histidinol dehydrogenase | 80 | 473 | 2.5E-147 | IPR012131 |
| ProSitePatterns | PS00611 | Histidinol dehydrogenase signature. | 276 | 308 | - | IPR001692 |
| PRINTS | PR00083 | Histidinol dehydrogenase signature | 298 | 317 | 6.2E-99 | IPR012131 |
| PRINTS | PR00083 | Histidinol dehydrogenase signature | 244 | 269 | 6.2E-99 | IPR012131 |
| PRINTS | PR00083 | Histidinol dehydrogenase signature | 408 | 426 | 6.2E-99 | IPR012131 |
| PRINTS | PR00083 | Histidinol dehydrogenase signature | 276 | 297 | 6.2E-99 | IPR012131 |
| PRINTS | PR00083 | Histidinol dehydrogenase signature | 367 | 392 | 6.2E-99 | IPR012131 |
| PRINTS | PR00083 | Histidinol dehydrogenase signature | 214 | 240 | 6.2E-99 | IPR012131 |
| PRINTS | PR00083 | Histidinol dehydrogenase signature | 179 | 205 | 6.2E-99 | IPR012131 |
| PRINTS | PR00083 | Histidinol dehydrogenase signature | 80 | 104 | 6.2E-99 | IPR012131 |
| Hamap | MF_01024 | Histidinol dehydrogenase [hisD]. | 55 | 475 | 62.492424 | IPR012131 |
| Coils | Coil | Coil | 460 | 480 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63890.1 | histidinol dehydrogenase. Encodes histidinol dehydrogenase. Up-regulated in response to UV-B. | 0 |
| RefSeq | XP_021657798.1 | histidinol dehydrogenase, chloroplastic isoform X1 [Hevea brasiliensis] | 0 |
| Q9C5U8 | Histidinol dehydrogenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HISN8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LMN3 | histidinol dehydrogenase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1489 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23447 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004930 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g001220 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29463, Sbi_jg3711 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6267 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000749 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10721, Sgl16076 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011615, gene:ENSEOMG00000025632 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0000830, CQ.Regalona.r1.4BG0000100 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30077100, pistato.v30077300 |
| Apiaceae | Apium graveolens | 1 | Ag7G01322 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G008930 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710491 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3250.V1.1, AsparagusV1_07.3475.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G05373, Ftri6G33859 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63890.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004035m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26950.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g012140.2N, BniB07g042570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1974 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl07G2112, Cgl07G2121, Cgl07G2169 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g03800 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0217s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06910 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.481 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014733, Pov_00037450 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27597 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.123, BH03.3863 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213550, gene-QOZ80_3BG0258670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0165510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043713 |
| Poaceae | Oryza coarctata | 2 | Oco01G005940, Oco02G006020 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g13190.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G058900, gene-BS78_01G219800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302857, Pt_Chr0302926 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G003430, Chr04G030010, Chr0G012730, Chr0G020610 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G519300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG042300, gene_TRIDC2BG045390 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G292100.1, TraesCS2B02G308600.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb059830_P005 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15264, nbis-gene-15266, nbis-gene-16395 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2629 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2014, evm.TU.LG06.311 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.990 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16835 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13064 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17284 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.142 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012275 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8619 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22990 |
| Salicaceae | Populus euphratica | 2 | populus_peu00070, populus_peu17142 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623324 |
| Solanaceae | Solanum chilense | 1 | SOLCI003514500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011402 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.26483_chr11_+, STRG.8703_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2436 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17900.v3.1 |