Basic Information
Locus ID:
nbisL1-mrna-8606
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 332208 | 333898 | - | nbisL1-mrna-8606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 61,206.58 Da | 44.15 | 94.34 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 278 | 408 | 5.9E-12 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 266 | 506 | 3.84E-22 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 58 | 227 | 3.17E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 272 | 409 | 4.8E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 410 | 504 | 1.0E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 18 | 214 | 2.8E-14 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 264 | 532 | 9.446472 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20790.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021640368.1 | putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Hevea brasiliensis] | 0 |
| Q9LDN1 | Putative cysteine-rich receptor-like protein kinase 33 OS=Arabidopsis thaliana OX=3702 GN=CRK33 PE=3 SV=1 | 0 | |
| TrEMBL | B9T6A3 | ATP binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0140310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20839 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30077740 |
| Apiaceae | Apium graveolens | 1 | Ag7G01839 |
| Arecaceae | Cocos nucifera | 1 | scaffold007984G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719634 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G20790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027352m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g18860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g070950.2N, BniB03g061230.2N, BniB05g016160.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0706 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.1104, evm.TU.LG12.1107 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00038579, Pov_00038580 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1024 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16864 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5711 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17313 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.152 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8606 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23018 |
| Salicaceae | Populus euphratica | 1 | populus_peu17179 |