Basic Information
Locus ID:
nbisL1-mrna-8606
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 3481351 | 3485378 | - | nbisL1-mrna-8606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 44,012.18 Da | 49.04 | 73.70 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 70 | 155 | 8.52593E-50 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 312 | 375 | 2.20341E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 315 | 379 | 1.1E-9 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 72 | 155 | 1.0E-17 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 65 | 164 | 4.84E-30 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 309 | 382 | 1.09E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 60 | 169 | 2.4E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 295 | 385 | 8.6E-17 | IPR036910 |
| SMART | SM01014 | ARID_2 | 65 | 155 | 1.3E-29 | - |
| SMART | SM00398 | hmgende2 | 311 | 380 | 2.5E-11 | IPR009071 |
| SMART | SM00501 | bright_3 | 69 | 160 | 4.5E-35 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 68 | 159 | 26.271164 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 312 | 379 | 12.894356 | IPR009071 |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 363 | 383 | 6.8E-5 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 344 | 363 | 6.8E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| Coils | Coil | Coil | 20 | 40 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_002531766.2 | high mobility group B protein 10 isoform X4 [Ricinus communis] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KIB9 | High mobility group family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology