Basic Information
Locus ID:
nbisL1-mrna-8599
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 55608140 | 55611399 | + | nbisL1-mrna-8599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 55,263.50 Da | 50.02 | 84.58 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 261 | 309 | 8.79292E-15 | - |
| Pfam | PF12906 | RING-variant domain | 261 | 308 | 1.8E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 312 | 3.61E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 316 | 6.1E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 260 | 309 | 1.9E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 253 | 315 | 19.155493 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 506 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039062892.1 | uncharacterized protein LOC120207514 isoform X1 [Hibiscus syriacus] | 0 |
| TrEMBL | A0A6A3C3U7 | Binding protein, putative isoform 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00014862pilonHSYRG00069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology