Basic Information
Locus ID:
nbisL1-mrna-8594
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 209982 | 214604 | + | nbisL1-mrna-8594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 87,709.75 Da | 55.74 | 78.05 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 16 | 173 | 8.25792E-53 | - |
| Pfam | PF00582 | Universal stress protein family | 17 | 157 | 1.2E-7 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 474 | 727 | 6.3E-42 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 162 | 2.93E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 455 | 732 | 7.42E-70 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 546 | 751 | 3.7E-50 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 3 | 171 | 1.8E-9 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 450 | 545 | 2.6E-25 | - |
| SMART | SM00220 | serkin_6 | 473 | 736 | 4.4E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 473 | 740 | 36.527214 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 591 | 603 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 339 | - | - |
| Coils | Coil | Coil | 332 | 359 | - | - |
| Coils | Coil | Coil | 365 | 385 | - | - |
| Coils | Coil | Coil | 408 | 451 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24370.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_038696897.1 | U-box domain-containing protein 35-like [Tripterygium wilfordii] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6J0ZPW6 | U-box domain-containing protein 35 OS=Herrania umbratica OX=108875 GN=LOC110411043 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology