Basic Information
Locus ID:
nbisL1-mrna-8584
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000059F_pilon | 4851280 | 4855606 | - | nbisL1-mrna-8584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 64,443.09 Da | 42.97 | 89.39 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 426 | 557 | 2.71053E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 428 | 555 | 2.3E-37 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 388 | 554 | 2.3E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 387 | 559 | 1.8E-72 | IPR027417 |
| SMART | SM00382 | AAA_5 | 424 | 561 | 2.7E-18 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 531 | 550 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 368 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_034894750.1 | uncharacterized protein LOC118033763 [Populus alba] | 0 |
| Q9P7J5 | Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC24B10.10c PE=3 SV=1 | 0 | |
| TrEMBL | A0A4U5PLI2 | AAA domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000211950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology