Basic Information
Locus ID:
nbisL1-mrna-8580
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Inactive serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 96021 | 104863 | - | nbisL1-mrna-8580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 190,109.45 Da | 53.19 | 90.97 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00180 | PKc | 240 | 320 | 2.69808E-15 | - |
| CDD | cd06071 | Beach | 382 | 611 | 9.64167E-78 | IPR000409 |
| Pfam | PF00069 | Protein kinase domain | 231 | 318 | 5.3E-9 | IPR000719 |
| Pfam | PF02138 | Beige/BEACH domain | 382 | 595 | 7.1E-43 | IPR000409 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1333 | 1632 | 4.89E-30 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 280 | 1138 | 1.0E-4 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 232 | 322 | 4.77E-19 | IPR011009 |
| SUPERFAMILY | SSF81837 | BEACH domain | 360 | 612 | 2.09E-74 | IPR036372 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 751 | 849 | 4.67E-11 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 733 | 833 | 2.7E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 231 | 350 | 2.8E-13 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1518 | 1692 | 3.2E-16 | IPR015943 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 373 | 639 | 5.1E-60 | IPR036372 |
| Gene3D | G3DSA:2.130.10.10 | - | 1326 | 1506 | 3.4E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1556 | 1594 | 5.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1454 | 1495 | 350.0 | IPR001680 |
| SMART | SM01026 | Beach_2 | 381 | 613 | 8.8E-89 | IPR000409 |
| SMART | SM00320 | WD40_4 | 1331 | 1374 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1377 | 1414 | 0.026 | IPR001680 |
| SMART | SM00220 | serkin_6 | 203 | 825 | 5.7E-4 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1563 | 1596 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 369 | 636 | 18.746126 | IPR000409 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1563 | 1596 | 8.913786 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 183 | 825 | 9.262731 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1581 | 1595 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 1 | 29 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18525.1 | protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases. | 0 |
| RefSeq | XP_021636926.1 | protein GFS12 isoform X1 [Hevea brasiliensis] | 0 |
| F4JY12 | Protein GFS12 OS=Arabidopsis thaliana OX=3702 GN=GFS12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K6J6 | Putative inactive serine/threonine-protein kinase lvsG isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15273 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2739 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019921 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g059860 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg38205, Sbi_jg6336, Sbi_jg6337 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15518, Seu_jg15519 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003668 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01617, Sgl06781, Sgl14571, Sgl19743, Sgl38309 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014373, gene:ENSEOMG00000031968 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0012530, CQ.Regalona.r1.3BG0012630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30232300 |
| Apiaceae | Apium graveolens | 1 | Ag5G01783 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000490 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721591, gene-LOC113463699 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3218.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA31678 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18525.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012423m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25800.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g044210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1414 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1506 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00260 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00690 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG11.1438, evm.TU.LG11.274 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026336 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01271, Lb1G01275 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.1522, CH02.1741 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_052776, gene-QYE76_052800 |
| Poaceae | Oryza coarctata | 1 | Oco02G009710 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g22390.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G141800, gene-BS78_03G144300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603612, Pt_Chr0603624 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G022450, Chr05G013370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G572000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG048410, gene_TRIDC7BG032450 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G346600.2, TraesCS7B02G236400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb131030_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6493 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10254 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1600, evm.TU.LG11.955 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1060 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16912 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15943 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.180 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012235 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8580 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23046 |
| Salicaceae | Populus euphratica | 1 | populus_peu20733 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604475 |
| Solanaceae | Solanum chilense | 1 | SOLCI005873100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006610 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6456 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1373 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26660.v3.1 |