Basic Information
Locus ID:
nbisL1-mrna-8525
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
transport protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 2646947 | 2656976 | - | nbisL1-mrna-8525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 138,647.94 Da | 43.80 | 82.37 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 381 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 114 | 151 | 5.1E-4 | IPR001680 |
| Pfam | PF12931 | Sec23-binding domain of Sec16 | 714 | 907 | 1.3E-7 | IPR024298 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 17 | 426 | 2.66E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 182 | 4.2E-35 | IPR015943 |
| Gene3D | G3DSA:1.20.940.10 | Functional domain of the splicing factor Prp18 | 1123 | 1232 | 3.5E-27 | - |
| Gene3D | G3DSA:1.25.40.1030 | - | 501 | 930 | 1.2E-112 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 229 | 426 | 1.1E-58 | IPR015943 |
| SMART | SM00320 | WD40_4 | 293 | 337 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 2.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 424 | 0.54 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 290 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 151 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 51 | 100 | 480.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 118 | 152 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 348 | 390 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 152 | 11.978851 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 138 | 152 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1087 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1087 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 707 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63460.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021688424.1 | protein transport protein SEC31 homolog B-like [Hevea brasiliensis] | 0 |
| Q8L611 | Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC31B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VHJ6 | Sec16_C domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_07G011900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1581, jg26645, jg26646, jg29002 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11259 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035675 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21723, Sbi_jg22096 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16020 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008639 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62953, Sgl63043, Sgl67593 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019227, gene:ENSEOMG00000022702 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017350, CQ.Regalona.r1.2BG0019120 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30229650 |
| Apiaceae | Apium graveolens | 2 | Ag1G00238, Ag9G00808 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G017830, COCNU_12G004510, COCNU_16G001910 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701661, gene-LOC103716930, gene-LOC103719227 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.27.V1.1, AsparagusV1_05.408.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G08744, Ftri5G25825 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G18830.1, AT3G63460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005758m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g00090.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g007880.2N, BniB06g052010.2N, BniB06g061010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0814 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0824 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g17140, gene.Cymno03g03310 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0345s00008.v1.0, Dusal.0345s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g14190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2660 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014885, Pov_00039337 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18905, Lb4G23426 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.3593, AH03.3933, BH01.3940, BH03.4224, CH01.4205 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0580080, gene-QOZ80_7BG0611160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0117400.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039137 |
| Poaceae | Oryza coarctata | 2 | Oco13G014660, Oco14G015500 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g46370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G371700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305046, Pt_Chr0600144 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G003020, Chr19G000990, Chr24G013390, Chr27G016430 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G273500, Tel6E01G603400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG016340, gene_TRIDC2BG019970 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G132900.1, TraesCS2B02G156400.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb110650_P001, Zm00001eb329590_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-196, nbis-gene-33157 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5704, Zma_g6995 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1976, evm.TU.LG15.1169 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g04970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.295, evm.TU.Scaffold_8_RagTag.1431 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19430, nbisL1-mrna-8525 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10913, nbisL1-mrna-20737, nbisL1-mrna-4704 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15234, nbisL1-mrna-6999 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.163, evm.TU.utg000028l.179 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002813, Maker00010871 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-8855, nbisL1-mrna-9504 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18802, nbisL1-mrna-20184 |
| Salicaceae | Populus euphratica | 2 | populus_peu01914, populus_peu35899 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644816 |
| Solanaceae | Solanum chilense | 1 | SOLCI005947600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002682 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2071_chr01_+, gene_12714 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0082, TC05G1318 |
| Zosteraceae | Zostera marina | 1 | Zosma01g36490.v3.1 |