Basic Information
Locus ID:
nbisL1-mrna-8520
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 2574265 | 2578765 | - | nbisL1-mrna-8520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 82,187.79 Da | 36.42 | 89.45 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 509 | 552 | 9.9E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 408 | 448 | 3.8E-8 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 646 | 674 | 4.6E-9 | IPR002885 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 184 | 298 | 5.2E-9 | IPR033443 |
| Pfam | PF13041 | PPR repeat family | 299 | 348 | 2.5E-11 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 296 | 607 | 4.93E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 613 | 682 | 1.3E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 399 | 472 | 4.4E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 329 | 398 | 1.0E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 259 | 328 | 9.8E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 113 | 258 | 2.5E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 475 | 612 | 1.8E-19 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 303 | 336 | 1.8E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 338 | 370 | 8.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 267 | 301 | 6.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 408 | 441 | 2.1E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 233 | 263 | 1.7E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 512 | 545 | 7.1E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 627 | 651 | 2.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 652 | 681 | 2.4E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 440 | 474 | 8.604678 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 615 | 649 | 8.878711 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 265 | 299 | 10.851745 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | 9.021208 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 335 | 369 | 11.432693 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 650 | 684 | 10.490022 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 509 | 543 | 11.049048 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 300 | 334 | 11.366925 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 405 | 439 | 11.388848 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20740.1 | Pentatricopeptide repeat (PPR-like) superfamily protein. | 0 |
| RefSeq | XP_021612703.1 | pentatricopeptide repeat-containing protein At4g20740 [Manihot esculenta] | 0 |
| Q9SVH3 | Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana OX=3702 GN=At4g20740 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2Q3G6 | Pentatricopeptide repeat-containing protein At4g20740 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2369, jg2373 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17205 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g040990 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg29904, Sbi_jg29905, Sbi_jg43369, Sbi_jg43370 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18523, Seu_jg18524 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004285 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66321, Sgl70657 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013307, gene:ENSEOMG00000051003 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0003600, CQ.Regalona.r1.2BG0006310 |
| Apiaceae | Apium graveolens | 1 | Ag5G01210 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002600 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714692 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.89.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri6G00337, Ftri6G17960 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G20740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024515m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g18820.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g016200.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2121, Ceq06G1687 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1749 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g26850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12188, nbisL1-mrna-2588 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.119 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039321 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.468, CH03.547 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0558050, gene-QOZ80_7BG0589130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0149600.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042827 |
| Poaceae | Oryza coarctata | 3 | Oco13G002550, Oco13G002560, Oco14G002780 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g08180.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G054200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303683 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G000390, Chr28G001890 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G455500, Tel5E01G412200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG018200, gene_TRIDC2BG022000 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G145600.1.cds1, TraesCS2B02G170600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb301300_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26826 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6087 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1053, evm.TU.LG25.261 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g09860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1436 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8520 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5640 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15230 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.72 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002980 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20522 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18806 |
| Salicaceae | Populus euphratica | 1 | populus_peu35114 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644839 |
| Solanaceae | Solanum chilense | 1 | SOLCI004749700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008583 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13284 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0706 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15050.v3.1 |