Basic Information
Locus ID:
nbisL1-mrna-8515
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Lymphoid organ expressed yellow head virus receptor protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 54718800 | 54721711 | - | nbisL1-mrna-8515 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 48,515.36 Da | 56.66 | 58.26 | -1.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06886 | Targeting protein for Xklp2 (TPX2) domain | 224 | 307 | 4.2E-24 | IPR027329 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 353 | - | - |
| Coils | Coil | Coil | 239 | 274 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35880.1 | TPX2 (targeting protein for Xklp2) protein family. | 0 |
| RefSeq | XP_039051469.1 | protein WVD2-like 4 isoform X2 [Hibiscus syriacus] | 0 |
| Q9SJ62 | Protein WVD2-like 4 OS=Arabidopsis thaliana OX=3702 GN=WDL4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A3A2C7 | Protein WVD2-like 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110610pilonHSYRG00469 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology