Basic Information
Locus ID:
nbisL1-mrna-8507
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 54635837 | 54647244 | + | nbisL1-mrna-8507 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 131,555.59 Da | 39.52 | 80.86 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 49 | 166 | 8.56854E-37 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 191 | 519 | 2.53671E-167 | - |
| Pfam | PF00917 | MATH domain | 55 | 174 | 7.9E-21 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 880 | 963 | 1.2E-17 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 618 | 870 | 4.7E-74 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 193 | 514 | 9.2E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 188 | 546 | 3.14E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 46 | 179 | 1.8E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 190 | 518 | 2.8E-88 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 46 | 189 | 8.1E-53 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 678 | 795 | 6.0E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 796 | 893 | 1.2E-27 | - |
| SMART | SM00061 | math_3 | 50 | 154 | 1.3E-22 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 193 | 517 | 39.774246 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 48 | 173 | 39.107819 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 194 | 209 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 433 | 450 | - | IPR018200 |
| Coils | Coil | Coil | 530 | 550 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_039061183.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Hibiscus syriacus] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A3CH34 | ubiquitinyl hydrolase 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00006570pilonHSYRG00039 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology