halophFGD

Basic Information

Locus ID: nbisL1-mrna-8484

Species & Taxonomic ID: Ceriops zippeliana & 413951

Genome Assembly: GCA_037897445.1

Description: Protein kinase domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
000059F_pilon	4282179	4283295	+	nbisL1-mrna-8484

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.17	29,468.24 Da	52.38	81.33	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00130	PAS	87	174	2.42682E-5	IPR000014
SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	90	174	1.47E-11	IPR035965
Gene3D	G3DSA:3.30.450.20	PAS domain	64	200	6.6E-13	-
TIGRFAM	TIGR00229	sensory_box: PAS domain S-box protein	90	172	1.0E-9	IPR000014
ProSiteProfiles	PS50112	PAS repeat profile.	91	134	8.751405	IPR000014

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23050.1	PAS domain-containing protein tyrosine kinase family protein.
RefSeq	XP_012087219.1	probable serine/threonine-protein kinase DDB_G0278535 [Jatropha curcas]
TrEMBL	A0A2K2B5Y2	Serine/threonine-protein kinase CTR1 OS=Populus trichocarpa OX=3694 GN=POPTR_003G122700 PE=4 SV=2

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg11273, jg12350, jg37149, jg5634
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1870, gene_2942
Amaranthaceae	Atriplex hortensis	2	Ah003784, Ah019216
Amaranthaceae	Beta vulgaris	2	BVRB_3g054260, BVRB_5g100950
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg23717, Sbi_jg38050, Sbi_jg6188, Sbi_jg7558
Amaranthaceae	Salicornia europaea	2	Seu_jg12477, Seu_jg15655
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001264, GOSA_00006231
Amaranthaceae	Suaeda glauca	5	Sgl00698, Sgl00815, Sgl05714, Sgl51910, Sgl57205
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000000965, gene:ENSEOMG00000007177 ... gene:ENSEOMG00000021646, gene:ENSEOMG00000025015, gene:ENSEOMG00000029552, gene:ENSEOMG00000046538
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0000490, CQ.Regalona.r1.3BG0000430 ... CQ.Regalona.r1.5AG0007830, CQ.Regalona.r1.5BG0008440
Anacardiaceae	Pistacia vera	2	pistato.v30143700, pistato.v30233080
Apiaceae	Apium graveolens	3	Ag5G01756, Ag7G00024, Ag9G01917
Arecaceae	Cocos nucifera	3	COCNU_01G001100, COCNU_07G007110, COCNU_12G003090
Arecaceae	Phoenix dactylifera	3	gene-LOC103712660, gene-LOC103714183, gene-LOC103721017
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.2197.V1.1, AsparagusV1_04.3090.V1.1 ... AsparagusV1_08.2581.V1.1
Asteraceae	Flaveria trinervia	5	Ftri12G14279, Ftri12G33227, Ftri14G20668, Ftri16G11959 ... Ftri2G32959
Brassicaceae	Arabidopsis thaliana	6	AT1G67890.1, AT3G06620.1, AT3G06630.1, AT3G06640.1 ... AT4G23050.2, AT5G49470.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10003711m.g.v1.0, Thhalv10020121m.g.v1.0 ... Thhalv10020142m.g.v1.0, Thhalv10024532m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp2g19790.v2.2, Sp3g05550.v2.2, Sp3g05570.v2.2 ... Sp3g05580.v2.2, Sp7g21130.v2.2, SpUn0021_0060.v2.2
Brassicaceae	Brassica nigra	7	BniB01g057040.2N, BniB01g057050.2N, BniB02g080200.2N ... BniB03g024530.2N, BniB05g014090.2N, BniB07g037820.2N, BniB07g059500.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0448, Ceq09G1038
Casuarinaceae	Casuarina glauca	2	Cgl03G0552, Cgl09G1128
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g01460, gene.Cymno05g04460
Dunaliellaceae	Dunaliella salina	2	Dusal.0080s00012.v1.0, Dusal.0459s00011.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g26680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1598, nbisL1-mrna-5471
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG10.1351, evm.TU.LG11.1188
Plantaginaceae	Plantago ovata	2	Pov_00003126, Pov_00026263
Plumbaginaceae	Limonium bicolor	5	Lb1G03004, Lb2G10757, Lb2G10762, Lb3G20507, Lb3G20619
Poaceae	Echinochloa crus-galli	5	AH04.2187, AH05.3742, BH04.2305, BH05.3792, CH05.3991
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_5AG0393980, gene-QOZ80_5BG0442190 ... gene-QOZ80_9AG0692440
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.3HG0309360.1, HORVU.MOREX.r3.3HG0309380.1 ... HORVU.MOREX.r3.4HG0359590.1, HORVU.MOREX.r3.5HG0443020.1, HORVU.MOREX.r3.5HG0512150.1, HORVU.MOREX.r3.6HG0617920.1
Poaceae	Lolium multiflorum	6	gene-QYE76_001592, gene-QYE76_001763, gene-QYE76_022828 ... gene-QYE76_061720, gene-QYE76_065523, gene-QYE76_065565
Poaceae	Oryza coarctata	4	Oco21G009800, Oco22G011050, Oco23G008460, Oco24G008060
Poaceae	Oryza sativa	3	LOC_Os01g48840.1, LOC_Os11g45280.1, LOC_Os12g37570.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G243100, gene-BS78_08G105300, gene-BS78_K201900
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0103469, Pt_Chr0107253, Pt_Chr0107281, Pt_Chr0206929 ... Pt_Chr0703884
Poaceae	Sporobolus alterniflorus	5	Chr04G017070, Chr06G017720, Chr19G009340, Chr27G007130 ... Chr31G008510
Poaceae	Thinopyrum elongatum	6	Tel3E01G667300, Tel4E01G227100, Tel5E01G170600 ... Tel5E01G629300, Tel5E01G629400, Tel6E01G570400
Poaceae	Triticum dicoccoides	11	gene_TRIDC3AG059610, gene_TRIDC3AG059630 ... gene_TRIDC3BG066980, gene_TRIDC4AG027570, gene_TRIDC4BG020080, gene_TRIDC5AG013160, gene_TRIDC5AG057660, gene_TRIDC5BG015110, gene_TRIDC5BG061830, gene_TRIDC6AG048310, gene_TRIDC6BG056450
Poaceae	Triticum aestivum	19	TraesCS3A02G420200.2, TraesCS3A02G420300.2 ... TraesCS3B02G455600.1, TraesCS3D02G415800.1, TraesCS3D02G415900.2, TraesCS4A02G171500.1, TraesCS4B02G127400.1, TraesCS4D02G143700.4, TraesCS5A02G085900.2, TraesCS5A02G396300.3, TraesCS5B02G091700.1, TraesCS5B02G401200.1, TraesCS5D02G097900.1, TraesCS5D02G405700.1, TraesCS5D02G405800.1, TraesCS6A02G321900.1, TraesCS6B02G352700.1, TraesCS6D02G301700.1, TraesCSU02G156700.4
Poaceae	Zea mays	3	Zm00001eb028510_P003, Zm00001eb136940_P001 ... Zm00001eb165210_P001
Poaceae	Zoysia japonica	2	nbis-gene-37647, nbis-gene-50044
Poaceae	Zoysia macrostachya	3	Zma_g18275, Zma_g25191, Zma_g25975
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.3431, evm.TU.LG10.302, evm.TU.LG11.1323 ... evm.TU.LG16.1162, evm.TU.LG16.157, evm.TU.LG17.299, evm.TU.LG20.1381
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g09330
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.225, evm.TU.Scaffold_6_RagTag.1195 ... evm.TU.Scaffold_6_RagTag.1196
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16177, nbisL1-mrna-18154
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-6570, nbisL1-mrna-8185, nbisL1-mrna-8270
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1028, nbisL1-mrna-8484, nbisL1-mrna-8485
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000007l.138, evm.TU.utg000011l.766
Rhizophoraceae	Kandelia obovata	2	Maker00007548, Maker00018605
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-13536
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-4054
Salicaceae	Populus euphratica	3	populus_peu06891, populus_peu20805, populus_peu34349
Solanaceae	Lycium barbarum	6	gene-LOC132604491, gene-LOC132604492, gene-LOC132604495 ... gene-LOC132609881, gene-LOC132626716, gene-LOC132634959
Solanaceae	Solanum chilense	4	SOLCI001642600, SOLCI003339400, SOLCI003349100 ... SOLCI006550400
Solanaceae	Solanum pennellii	4	gene-LOC107007278, gene-LOC107008009, gene-LOC107026790 ... gene-LOC107027881
Tamaricaceae	Reaumuria soongarica	4	STRG.21908_chr08_+, STRG.23509_chr05_-, STRG.7977_chr04_- ... gene_3578
Tamaricaceae	Tamarix chinensis	3	TC01G4339, TC05G2101, TC06G1356
Zosteraceae	Zostera marina	1	Zosma02g25400.v3.1